1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attcttttctaaacatataaattcattgcattcttgtttcctgacttgtgttttcttaaaacttatttttttctttttccctttcctttattctgtgcagCTTCAGCGAGTGGTGATTTCCGTGGGGAAATGTTGCTAATGGGATTTTGTATGGTATTAATTTCATTTGTTTTTCTCAATGATACCACATTTTGATGATA
species | Glycine max |
transcript | GLYMA08G19740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGACGTCTAATAAACTGGTGTCTCATCTACTTGCTCCATCCTCTTTAT CTTCAGCGAGTGGTGATTTCCGTGGGGAAATGTTGCTAATGGGATTTTGTAEST: gi|58015573|gb|CX702315.1|CX702315
genomic: AGAGACGTCTAATAAACTGGTGTCTCATCTACTTGCTCCATCCTCTTTATgtaagtttat ... ttctgtgcagCTTCAGCGAGTGGTGATTTCCGTGGGGAAATGTTGCTAATGGGATTTTGTA
EST: AGAGACGTCTAATAAACTGGTGTCTCATCTACTTGCTCCATCCTCTTTAT CTTCAGCGAGTGGTGATTTCCGTGGGGAAATGTTGCT-ATGGGGATTTTGT
genomic: AGAGACGTCTAATAAACTGGTGTCTCATCTACTTGCTCCATCCTCTTTATgtaagtttat ... ttctgtgcagCTTCAGCGAGTGGTGATTTCCGTGGGGAAATGTTGCTAAT-GGGATTTTGT
ttgtgttttcttaaaacttatttttttctttttccctttcctttattctgtgcagCTTCAGCGAGTGGTGATTTCCGTGGGGAAATGTTGCTAATGGGATTTTGTATGGTATTAATTTCATTTGTTTTTCTCAATGATACCACATTTTGATGATA
cttatttttttctttt CT-rich tract
ttttcttaaaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcttttctaaacatataaattcattgcattcttgtttcctgacttgtgttttcttaaaacttatttttttctttttccctttcctttattctgtgcagCTTCAGCGAGTGGTGATTTCCGTGGGGAAATGTTGCTAATGGGATTTTGTATGGTATTAATTTCATTTGTTTTTCTCAATGATACCACATTTTGATGATA
- - - - ctaaaca
- - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - - - - -tgacttg