1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attaatcttctgcattatatactgtatcaccatttaaatttgtatccaagtgacattactaaatttattgatgatttatttcccttcaaaatattttcagCTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTCCATATATTGAAACATTAGAACATGATATGCACGACGAAATAGCTCTACC
species | Glycine max |
transcript | GLYMA08G19740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAACACCATCTCATATAGTTTTGATGCAAAAGATGTAATTAAGCAAAGTG CTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTCEST: gi|209710030|gb|BW658858.1|BW658858
genomic: CAACACCATCTCATATAGTTTTGATGCAAAAGATGTAATTAAGCAAAGTGgtcagtctcg ... atattttcagCTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTC
EST: CAACACCATCTCATATAGTTTTGATGCAAAAGATGTAATTAAGCAAAGTG CTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTCEST: gi|213593778|gb|DB957898.1|DB957898
genomic: CAACACCATCTCATATAGTTTTGATGCAAAAGATGTAATTAAGCAAAGTGgtcagtctcg ... atattttcagCTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTC
EST: CAACACCATCTCATATAGTTTTGATGCAAAAGATGTAATTAAGCAAAGTG CTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTC
genomic: CAACACCATCTCATATAGTTTTGATGCAAAAGATGTAATTAAGCAAAGTGgtcagtctcg ... atattttcagCTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTC
ccaagtgacattactaaatttattgatgatttatttcccttcaaaatattttcagCTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTCCATATATTGAAACATTAGAACATGATATGCACGACGAAATAGCTCTACC
tattttc CT-rich tract
acattactaaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaatcttctgcattatatactgtatcaccatttaaatttgtatccaagtgacattactaaatttattgatgatttatttcccttcaaaatattttcagCTTCTGTTCAGACATCCTTCAGACTGGAAAAACCGGTTTCACAGCTTATTCCATATATTGAAACATTAGAACATGATATGCACGACGAAATAGCTCTACC
- - - - - tgcatta
- - - - - - - - - - - - - tcaccat
- - - - - - - - - - - - - - - - - - - - - - -ccaagtg