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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttggttttgcccttgcttgtgttcttatatttttttttttccctaagactgtttaggcatatggcttataagctatttaaccttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTGGTGTTTGGTGTTCTCTCTGATCCAATGAATTCTTCAATAAATCCAGTGT

Basic information

species Glycine max
transcript GLYMA08G19740.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19740.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0034g01420.t01 (Vitis vinifera), 3'ss of exon 2
gttttggttttgcccttgc-ttgtgttcttatatttttttttttccctaagactgtttaggcatatggcttataagctatttaaccttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTGGTGTTTGGTGTTCTCTCTGATCCAATGAATTCTTCAATAAATCCAGTGT
|||||  ||    ||  |  |||  || |  | | | || || ||  |  || |    |         | || |||| | |    || ||||||||| |   || || ||||||||      | |  ||||||| ||||| ||||||||||||||||| || |||||||| |||  | |||||||||||||||
gttttctttcaagccgagaattgcattttcttttatcttgttctctttttgaataaagaaaagatcaacctaaaagcaaat-gttctcaacagGTGGTTGCTCTATCAATGCACCAGGCAGGTGCTTCTAACTGGACTGATGTGGTGTTTGGTGTTCTTTCGGATCCAATAAATGTTCCAATAAATCCAGTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603049|gb|DB960382.1|DB960382
EST:     AAACATTAGAACATGATATGCACGACGAAATAGCTCTACCAAATACAGAG                         GTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTG
genomic: AAACATTAGAACATGATATGCACGACGAAATAGCTCTACCAAATACAGAGgttttggttt ... accttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTG
EST: gi|209710030|gb|BW658858.1|BW658858
EST:     AAACATTAGAACATGATATGCACGACGAAATAGCTCTACCAAATACAGAG                         GTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTG
genomic: AAACATTAGAACATGATATGCACGACGAAATAGCTCTACCAAATACAGAGgttttggttt ... accttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTG
EST: gi|213593778|gb|DB957898.1|DB957898
EST:     AAACATTAGAACATGATATGCACGACGAAATAGCTCTACCAAATACAGAG                         GTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTG
genomic: AAACATTAGAACATGATATGCACGACGAAATAGCTCTACCAAATACAGAGgttttggttt ... accttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttccctaagactgtttaggcatatggcttataagctatttaaccttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTGGTGTTTGGTGTTCTCTCTGATCCAATGAATTCTTCAATAAATCCAGTGT
                                        atttaac  putative branch site (score: 3)
                               ttataagctatttaa  TA-rich tract