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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgtattacctagtgggataaggcttttgttgttgttgttgttgtaccatgacatttcattcccaagatttatcattggttatatttctatttta...

Basic information

species Glycine max
transcript GLYMA08G19670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19670.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g34360.1 (Oryza sativa), 5'ss of exon 4
GGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgtattacctagtgggataaggcttttgttgttgttgttgttgtaccatgacatttcattcccaagatttatcattggttatatttctatttta-
||||||| || |||||||| ||||||||||||||| |||| |||||||  || ||   ||| || |||||||| ||||| |||||||| ||||| ||||||| || | | || |||  |     |  |    ||   | ||    || |||   |  | |   ||  |    |  ||||  || |  || || || |    
GGCAGAGCGCATGGATCATAACTGCATTCTGGGACGTTCTTGCATTTGTTTTGCTTCTTGTGATTTGTTATCTATGGGCGCCATCCCAGAGCTCACAAAGgttaaatct-ttgcctcttcaatgactggaaatgccatagtgaaagtagtagtgtagcttgaaatgacttgaaagtatctgtgttgctacttgtaataacc

upper sequence: GLYMA08G19670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0034g01090.t01 (Vitis vinifera), 5'ss of exon 4
GGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgtattacct--agtgggataaggcttttgttgttgttgttgttgtaccatgacatttcattcccaagatttatcatt--ggttatatttctatttta
||||||||||||||||||| ||||| || ||||||||||| || |||| ||| |||||||| || || ||||||||||| ||||| || ||||| ||| ||||  ||  ||| |    | |   ||| || |  |   |  ||| || ||  ||  | |  |   |      | ||  ||  ||  ||| |||||  |  ||  
GGCAGAGTGCTTGGATCATTACTGCTTTTTGGGACATTCTTGCTTTTGGATTGCTCTGTGTCATCTGCTATCTCTGGGCTCCATCTCAGAGCTCCCAACGgtgcgttaaatttctataaatttcatatgg-tcatagggaggttcttctta-actgtaaactactaaaatataaatccatgttttgggtcatattagtcatt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300547|gb|FG988874.1|FG988874
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|192334689|gb|FK025894.1|FK025894
EST:     GGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: GGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|8669400|gb|BE190507.1|BE190507
EST:     TTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|151399137|gb|EV269008.1|EV269008
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|192321509|gb|FK011767.1|FK011767
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCCCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|192334688|gb|FK025893.1|FK025893
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|11689945|gb|BF597621.1|BF597621
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|192319963|gb|FK013319.1|FK013319
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCCCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA