1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCAAAACGAAGTTCTGTTAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAGgtaaggctataattgtgtttgaataacacctacttcttgtaatgaataactgaaattgatgttttatccaccaaaaaaaactgatatccatatttcactg...
species | Glycine max |
transcript | GLYMA08G19670.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAG GTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGGEST: gi|151399137|gb|EV269008.1|EV269008
genomic: ATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAGgtaaggctat ... tcttttacagGTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGG
EST: ATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAG GTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGGEST: gi|192334688|gb|FK025893.1|FK025893
genomic: ATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAGgtaaggctat ... tcttttacagGTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGG
EST: ATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAG GTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGG
genomic: ATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAGgtaaggctat ... tcttttacagGTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAACGAAGTTCTGTTAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAGgtaaggctataattgtgtttgaataacacctacttcttgtaatgaataactgaaattgatgttttatccaccaaaaaaaactgatatccatatttcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccaa