1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaaattatcacgtcatttcttgttgtaatgtctgattcaaatggcttagggatgagtctcacttattaagtttgatttgcctctgcaatctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACCAAGGGAAAGCAGGAAGGTCAAGGTGAACTAAGTTTAGTT
species | Glycine max |
transcript | GLYMA08G19670.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAEST: gi|192334689|gb|FK025894.1|FK025894
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: GGGCCCCATCCCAAAGCTCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAEST: gi|8669400|gb|BE190507.1|BE190507
genomic: GGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: TTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAEST: gi|151399137|gb|EV269008.1|EV269008
genomic: TTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAEST: gi|192321509|gb|FK011767.1|FK011767
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCCCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAEST: gi|192334688|gb|FK025893.1|FK025893
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAEST: gi|11689945|gb|BF597621.1|BF597621
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAEST: gi|192319963|gb|FK013319.1|FK013319
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCCCTCAAAG GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... ctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
cttagggatgagtctcacttattaagtttgatttgcctctgcaatctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACCAAGGGAAAGCAGGAAGGTCAAGGTGAACTAAGTTTAGTT
ttattaagtttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaattatcacgtcatttcttgttgtaatgtctgattcaaatggcttagggatgagtctcacttattaagtttgatttgcctctgcaatctatgtatagGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACCAAGGGAAAGCAGGAAGGTCAAGGTGAACTAAGTTTAGTT
- - - - -cacgtca
- - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - ctgattc