1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaatttgtatatgaatttaataatttatatctcttacatcatctttggttatgtgtcaaatataccacacaactccggcttttttctttgggggggatagATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGGTTCTGTGCCATTACACATCATAATTTTTGAGGCTGCTGATCGTAATGAT
species | Glycine max |
transcript | GLYMA08G19670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTTCCCAACCCAATTCCATTCACGAACAAATGGCCGTTCCTACATTCG ATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGGEST: gi|192298552|gb|FG989228.1|FG989228
genomic: CGCTTCCCAAGCCAATTCCATCCACG-AC-GATGGCCGTTCCTACATTCGgtaacctctc ... ggggggatagATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGG
EST: GTCGCTTCCCAAGCCAATTCCATCCACGACGATGGCCGTTCCTACATTCG ATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGGEST: gi|213617263|gb|DB972901.1|DB972901
genomic: GTCGCTTCCCAAGCCAATTCCATCCACGACGATGGCCGTTCCTACATTCGgtaacctctc ... ggggggatagATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGG
EST: GTCGCTTCCCAAGCCAATTCCATCCACGACGATGGCCGTTCCTACATTCG ATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGG
genomic: GTCGCTTCCCAAGCCAATTCCATCCACGACGATGGCCGTTCCTACATTCGgtaacctctc ... ggggggatagATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGG
tggttatgtgtcaaatataccacacaactccggcttttttctttgggggggatagATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGGTTCTGTGCCATTACACATCATAATTTTTGAGGCTGCTGATCGTAATGAT
ttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttgtatatgaatttaataatttatatctcttacatcatctttggttatgtgtcaaatataccacacaactccggcttttttctttgggggggatagATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGGTTCTGTGCCATTACACATCATAATTTTTGAGGCTGCTGATCGTAATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca