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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagagtttagttcattttttacttatgactatgattttttcatgcagcatgggatggttggggcctttggggaaaaagctgcaaaacagccatag...

Basic information

species Glycine max
transcript GLYMA08G19660.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301236|gb|FG990186.1|FG990186
EST:     AATTTGGGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|192328848|gb|FK022592.1|FK022592
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|18040251|gb|BM308545.1|BM308545
EST:     ATTTGAGGAGTATGACTTTGGCA-GAACAGGAAGCAATGCCACTGAAAAG                         GGGGATCTCAAAGAGGGTCC
genomic: ATTTGAGGAGTATGACTTTG-CAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCC
EST: gi|298194100|gb|HO040748.1|HO040748
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|151393611|gb|EV263486.1|EV263486
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCTATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|24206192|gb|BU965445.1|BU965445
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|151393020|gb|EV262895.1|EV262895
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|298180011|gb|HO025226.1|HO025226
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|5677852|gb|AI938982.1|AI938982
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCATAGAGGGTNCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|192302607|gb|FG994873.1|FG994873
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|7147014|gb|AW508936.1|AW508936
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|22932190|gb|BU549329.1|BU549329
EST:     GAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: GAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|58018160|gb|CX704902.1|CX704902
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|192302608|gb|FG994874.1|FG994874
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|192301600|gb|FG994784.1|FG994784
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|14990628|gb|BI316301.1|BI316301
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|17153605|gb|BM143538.1|BM143538
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|192297638|gb|FG989931.1|FG989931
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|14126392|gb|BG790830.1|BG790830
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|151397245|gb|EV267118.1|EV267118
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|193532401|gb|FK489687.1|FK489687
EST:     AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG                         GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: gi|4405697|gb|AI507846.1|AI507846
EST:     ATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGGCCACTGAAAGG                         G-GGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: ATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATG-CCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagagtttagttcattttttacttatgactatgattttttcatgcagcatgggatggttggggcctttggggaaaaagctgcaaaacagccatag

- - - - - - - - GAGGAG
- - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgggg