1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTATACCCATCACAAACCTAAAACCCTACAGCCAGCCGGAGAAGTTGCAACTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgtttcgtttcgatgctctgattattcattcattctctattttgttgcgtgtaataaaaaaactggaagcgaagacgatgattttgttgacatatctgaaaaaaaaacgcag
species | Glycine max |
transcript | GLYMA08G19660.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|192328848|gb|FK022592.1|FK022592
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACGAG TTACGCTTTCAAAGATGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|18040251|gb|BM308545.1|BM308545
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|298194100|gb|HO040748.1|HO040748
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|151393611|gb|EV263486.1|EV263486
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|24206192|gb|BU965445.1|BU965445
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|151393020|gb|EV262895.1|EV262895
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACG-AGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|13478398|gb|BG507890.1|BG507890
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|298180011|gb|HO025226.1|HO025226
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|192302607|gb|FG994873.1|FG994873
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|192301600|gb|FG994784.1|FG994784
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTTAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAGAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|17153605|gb|BM143538.1|BM143538
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|192297638|gb|FG989931.1|FG989931
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCTAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|151397245|gb|EV267118.1|EV267118
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAG TTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
genomic: CTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATACCCATCACAAACCTAAAACCCTACAGCCAGCCGGAGAAGTTGCAACTGCGAACAGAACAACTTCAAAATGCCAAAATCCAAGAGAAATAGACAAGgtttgcgtttcgtttcgatgctctgattattcattcattctctattttgttgcgtgtaataaaaaaactggaagcgaagacgatgattttgttgacatatctgaaaaaaaaacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA