Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaagaacaatttgttactattagcattttcctactctttcattggtgttccgttttctttttcactctgactgaatttttttgttgatgccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG

Basic information

species Glycine max
transcript GLYMA08G19660.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301236|gb|FG990186.1|FG990186
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGGGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|192328848|gb|FK022592.1|FK022592
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|18040251|gb|BM308545.1|BM308545
EST:     GGAGATTCTGGGATGGGTTTCACCAATTTGGCAAAGGAAGAAGTTGAAAG                         GCTGGTTAAAGAATTTGAGGAGTATGACTTTGGCA-GAACAGGAAGCAATG
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTG-CAAGAACAGGAAGCAATG
EST: gi|298194100|gb|HO040748.1|HO040748
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|151393611|gb|EV263486.1|EV263486
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|24206192|gb|BU965445.1|BU965445
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|151393020|gb|EV262895.1|EV262895
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|298180011|gb|HO025226.1|HO025226
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAACAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|5677852|gb|AI938982.1|AI938982
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|192302607|gb|FG994873.1|FG994873
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|7147014|gb|AW508936.1|AW508936
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|58018160|gb|CX704902.1|CX704902
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|192302608|gb|FG994874.1|FG994874
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|192301600|gb|FG994784.1|FG994784
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|14990628|gb|BI316301.1|BI316301
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|17153605|gb|BM143538.1|BM143538
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|192297638|gb|FG989931.1|FG989931
EST:     GGAGGTTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|14126392|gb|BG790830.1|BG790830
EST:     TTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: TTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|151397245|gb|EV267118.1|EV267118
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|193532401|gb|FK489687.1|FK489687
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGC
EST: gi|4405697|gb|AI507846.1|AI507846
EST:     GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAG                         GCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGG
genomic: GGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGgtaactttgg ... ccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATG-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttccgttttctttttcactctgactgaatttttttgttgatgccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG
                             aatttttttgttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaagaacaatttgttactattagcattttcctactctttcattggtgttccgttttctttttcactctgactgaatttttttgttgatgccatttacagGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg