1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccacatcaataggaatcatttgcctgtcatatccattagatcctcaattctgttttaatctatgaataaaactcacactttcatgatctgagtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG
species | Glycine max |
transcript | GLYMA08G19660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTTGGGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|192328848|gb|FK022592.1|FK022592
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|18040251|gb|BM308545.1|BM308545
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: ATTTGAGGAGTATGACTTTGGCA-GAACAGGAAGCAATGCCACTGAAAAG GGGGATCTCAAAGAGGGTCCEST: gi|298194100|gb|HO040748.1|HO040748
genomic: ATTTGAGGAGTATGACTTTG-CAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCC
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|151393611|gb|EV263486.1|EV263486
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCTATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|24206192|gb|BU965445.1|BU965445
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|151393020|gb|EV262895.1|EV262895
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|298180011|gb|HO025226.1|HO025226
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|5677852|gb|AI938982.1|AI938982
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCATAGAGGGTNCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|192302607|gb|FG994873.1|FG994873
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|7147014|gb|AW508936.1|AW508936
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|22932190|gb|BU549329.1|BU549329
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: GAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|58018160|gb|CX704902.1|CX704902
genomic: GAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|192302608|gb|FG994874.1|FG994874
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|192301600|gb|FG994784.1|FG994784
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|14990628|gb|BI316301.1|BI316301
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|17153605|gb|BM143538.1|BM143538
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|192297638|gb|FG989931.1|FG989931
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|14126392|gb|BG790830.1|BG790830
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|151397245|gb|EV267118.1|EV267118
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|193532401|gb|FK489687.1|FK489687
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAG GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTEST: gi|4405697|gb|AI507846.1|AI507846
genomic: AATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
EST: ATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGGCCACTGAAAGG G-GGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
genomic: ATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATG-CCACTGAAAAGgtaattagag ... agtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCT
aattctgttttaatctatgaataaaactcacactttcatgatctgagtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG
aactcac putative branch site (score: 2)
tgttttaatctatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacatcaataggaatcatttgcctgtcatatccattagatcctcaattctgttttaatctatgaataaaactcacactttcatgatctgagtgttatagGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
ccacatc
- - - - - - - - - - - cctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatc