1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATTTAAATTTGCAGGACTAAAGCAGAGCCTCCAATCTACTATTTGCCTAACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaacttggaaatttgatttcttttggtcttcatcttatagcatcattttgttcaccatggacagccatcccagatttgcccgttaaatctcctc...
species | Glycine max |
transcript | GLYMA08G19640.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTTGAGAAGNGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|207731212|gb|GD708869.1|GD708869
genomic: CTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|193496460|gb|FK460702.1|FK460702
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|207690474|gb|GD672014.1|GD672014
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|193370194|gb|FK336756.1|FK336756
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|13311761|gb|BG405412.1|BG405412
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAAAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTTGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|207826946|gb|GD797467.1|GD797467
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: AGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|208122350|gb|GD920815.1|GD920815
genomic: AGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|207700607|gb|GD683714.1|GD683714
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTAAATTTGCAGGACTAAAGCAGAGCCTCCAATCTACTATTTGCCTAACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaacttggaaatttgatttcttttggtcttcatcttatagcatcattttgttcaccatggacagccatcccagatttgcccgttaaatctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG