1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTGGTGCTTAGTGCTCACACCAATTACCAATGGCAGTGGAGAAGACGGAGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctctctctgcatattcatatctgtgtttatgtgttgaaatcgtttcttatgtttatttgttacttttgtag
species | Glycine max |
transcript | GLYMA08G19640.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGEST: gi|213601376|gb|DB968706.1|DB968706
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGEST: gi|6482510|gb|AW201767.1|AW201767
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGEST: gi|298169192|gb|HO020552.1|HO020552
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGEST: gi|208329334|gb|GE128462.1|GE128462
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGEST: gi|207823507|gb|GD795792.1|GD795792
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGTGCTTAGTGCTCACACCAATTACCAATGGCAGTGGAGAAGACGGAGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctctctctgcatattcatatctgtgtttatgtgttgaaatcgtttcttatgtttatttgttacttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT