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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctctctctctctgcatattcatatctgtgtttatgtgttgaaatcgtttcttatgtttatttgttacttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGGGTCCTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTC

Basic information

species Glycine max
transcript GLYMA08G19640.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193477758|gb|FK442305.1|FK442305
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: gi|213601376|gb|DB968706.1|DB968706
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: gi|6482510|gb|AW201767.1|AW201767
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: gi|298169192|gb|HO020552.1|HO020552
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: gi|208329334|gb|GE128462.1|GE128462
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: gi|207823507|gb|GD795792.1|GD795792
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctgtgtttatgtgttgaaatcgtttcttatgtttatttgttacttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGGGTCCTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTC
                                           ttactttt  CT-rich tract
                              ttatgtttatttgtta  TA-rich tract