1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagttttccctctctctttctctctttagggttcactccaaattcattgtattcatatatttattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCATCTGCCGTCGTTAAG
species | Glycine max |
transcript | GLYMA08G19640.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGA-CCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|208197185|gb|GD999372.1|GD999372
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|193380715|gb|FK347440.1|FK347440
genomic: CACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|208089087|gb|GD888196.1|GD888196
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: TCCTGTCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|213601376|gb|DB968706.1|DB968706
genomic: TCCTG-CTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|208117757|gb|GD914639.1|GD914639
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCG GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|208313448|gb|GE116004.1|GE116004
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CCTGCTCTTCCGTCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|6482510|gb|AW201767.1|AW201767
genomic: CCTGCTC-TCCG-CACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|207790516|gb|GD760449.1|GD760449
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCGGAAGATCAACCTCCCTCCAAGCGTCGACTTTCAEST: gi|298169192|gb|HO020552.1|HO020552
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|193380644|gb|FK347384.1|FK347384
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGTGTCGACTTTCAEST: gi|207784086|gb|GD758396.1|GD758396
genomic: CCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|208058055|gb|GD860158.1|GD860158
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACCGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|208247720|gb|GE044842.1|GE044842
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCAEST: gi|207823507|gb|GD795792.1|GD795792
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCA
EST: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCT GGAGACAGGAACG
genomic: CTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTgttagttttc ... tattattcagGGAGACAGGAACG
tttctctctttagggttcactccaaattcattgtattcatatatttattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCATCTGCCGTCGTTAAG
aaattcattgtattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttccctctctctttctctctttagggttcactccaaattcattgtattcatatatttattattcagGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCATCTGCCGTCGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA