1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGACGGCGTTGTTCCCCTTATTACGATCAACTCGATCGGATGTGTCATAGAGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatacctttttctatatatgcataattaacttactacttggatcatcatcattaacttaattttaattacag
species | Glycine max |
transcript | GLYMA08G19580.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGG AACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTGEST: gi|298199219|gb|HO042582.1|HO042582
genomic: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatac ... ttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
EST: AGCTCATCTACATTCTCACTTACATTAAATATGCGCACAAGGATGCATGG AACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTGEST: gi|5753452|gb|AI960739.1|AI960739
genomic: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatac ... ttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
EST: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGG AACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
genomic: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatac ... ttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGGCGTTGTTCCCCTTATTACGATCAACTCGATCGGATGTGTCATAGAGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatacctttttctatatatgcataattaacttactacttggatcatcatcattaacttaattttaattacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG