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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctatatcaactttttcttaacaggcgaatgcttcctaattattaaaatgaagttgatgattaattaattttgtgattgcagGCCAACGTTTTACCGGATATACAAAAAGAAATGCACGGACGGTTTCCACTCGCTGCCATACTTGTTGTCATTAATGAGTTCTATGCTTTGGTTATACTAC

Basic information

species Glycine max
transcript GLYMA08G19580.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6665883|gb|AW277342.1|AW277342
EST:     GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT                         GCCAACGTTTTACCGGATATACAAAAAGAAATGCACGGACGGTTTCCACTC
genomic: GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGTgtaagttcta ... gtgattgcagGCCAACGTTTTACCGGATATACAAAAAGAAATGCACGGACGGTTTCCACTC
EST: gi|298199219|gb|HO042582.1|HO042582
EST:     GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT                         GCCAACGTTTTACCGGATATACAAAAAGAAATGCACGGACGGTTTCCACTC
genomic: GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGTgtaagttcta ... gtgattgcagGCCAACGTTTTACCGGATATACAAAAAGAAATGCACGGACGGTTTCCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcttcctaattattaaaatgaagttgatgattaattaattttgtgattgcagGCCAACGTTTTACCGGATATACAAAAAGAAATGCACGGACGGTTTCCACTCGCTGCCATACTTGTTGTCATTAATGAGTTCTATGCTTTGGTTATACTAC
         taattattaaaatgaa  TA-rich tract