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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatacctttttctatatatgcataattaacttactacttggatcatcatcattaacttaattttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTGGTCCTTTCCTCGCGTTTTGCTCTAAATGGTTCCCACCGGGTCAAAGTCA

Basic information

species Glycine max
transcript GLYMA08G19580.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6665883|gb|AW277342.1|AW277342
EST:     AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGG                         AACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
genomic: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatac ... ttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
EST: gi|298199219|gb|HO042582.1|HO042582
EST:     AGCTCATCTACATTCTCACTTACATTAAATATGCGCACAAGGATGCATGG                         AACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
genomic: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatac ... ttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
EST: gi|5753452|gb|AI960739.1|AI960739
EST:     AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGG                         AACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG
genomic: AGCTCATCTACATTCTCACCTACATTAAATATGCGCACAAGGATGCAAGGgtatatatac ... ttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcataattaacttactacttggatcatcatcattaacttaattttaattacagAACTTAACCTATACCCTATTTGCGGCGATGAATATTGGCTTCTTGGCCTTGGTCCTTTCCTCGCGTTTTGCTCTAAATGGTTCCCACCGGGTCAAAGTCA
                        atcatcatcattaact  TA-rich tract