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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatttgcttaataataataataataataataagtgtatataatattgaattatataagttgcattggctttgagctataatcatgaatttagta...

Basic information

species Glycine max
transcript GLYMA08G19460.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208169802|gb|GD967847.1|GD967847
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCT
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCT
EST: gi|208106678|gb|GD905627.1|GD905627
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|193716958|gb|FK650778.1|FK650778
EST:     G-CAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|193345861|gb|FK310052.1|FK310052
EST:     TCAGTGGAGGTTGGGTTGGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCC-TGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: TCAGTGGAGGTTGGGTTGG-AATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|207699328|gb|GD679802.1|GD679802
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|193318215|gb|FK286255.1|FK286255
EST:     TCAGTGGAGGTTGGGTTGGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: TCAGTGGAGGTTGGGTT-GGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|208227979|gb|GE025975.1|GE025975
EST:     CAGTGGAGGTTGGGTTGGGAATATTAGGCTTTTGTACTGCAGCATATACG                         CCCCCTCGATGCTCGTGACGGT
genomic: CAGTGGAGGTTGGGTTGG-AATATTAGGCTTTTG-ACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCT-GATGCTCGTGACGGT
EST: gi|208317433|gb|GE114408.1|GE114408
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|208302588|gb|GE097861.1|GE097861
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|193695642|gb|FK633890.1|FK633890
EST:     GTCAGCGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|208251493|gb|GE044176.1|GE044176
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|193318119|gb|FK286677.1|FK286677
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|208224909|gb|GE026294.1|GE026294
EST:     TCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGTACTGCAGCATATACG                         CCCCCTCGATGCTCGT
genomic: TCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTG-ACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCT-GATGCTCGT
EST: gi|208143231|gb|GD941955.1|GD941955
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCGTATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
EST: gi|207821388|gb|GD790131.1|GD790131
EST:     GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACG                         CCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA
genomic: GTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatt ... ctgttttcagCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGgtatgatatttgcttaataataataataataataataagtgtatataatattgaattatataagttgcattggctttgagctataatcatgaatttagta

- - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG