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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttgaaggaatagatcaattcatggagatatgttatttgtaattgactatattatttcacttaaagtgacgaggtgctagcctatgatttaatatgcagGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAATGTCGAACCTTATACCAGGCATAACCTTTATC

Basic information

species Glycine max
transcript GLYMA08G19460.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193619544|gb|FK572154.1|FK572154
EST:     AAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTA-TTGG                         GGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGC
genomic: AAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGgtatgtatgt ... taatatgcagGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGC
EST: gi|7587992|gb|AW703797.1|AW703797
EST:     TTTCTTTGCGGCTTATTTGG                         GGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGC
genomic: TTTCTTTGCGGCTTATTTGGgtatgtatgt ... taatatgcagGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactatattatttcacttaaagtgacgaggtgctagcctatgatttaatatgcagGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAATGTCGAACCTTATACCAGGCATAACCTTTATC
     tattatttcacttaaa  TA-rich tract