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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actctgtcaaaggatgttgggcaaatattttgcaaataattaatcaatattagcattatttaactttgtttttaatttattttgtataatttttgtgcagGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGA

Basic information

species Glycine max
transcript GLYMA08G19460.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7587992|gb|AW703797.1|AW703797
EST:     TGTGCGCCCTGGCTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAG                         GCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATG
genomic: TGTGCGCCCTGGCTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGgtccattttc ... ttttgtgcagGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattagcattatttaactttgtttttaatttattttgtataatttttgtgcagGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGA
                        ttttaat  putative branch site (score: 3)
                                            tttttgt  putative PPT
         attatttaactttgtt  TA-rich tract