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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

Basic information

species Glycine max
transcript GLYMA08G19420.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttg-gcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
       |||| ||    | |  |  |||| | | || | |   |    ||    ||   ||| ||  |    || |     |  |||| |  ||   |||||||||||||||||||||||||||||||||  |||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||
------gcatgtgtccattttctac-tatt-caaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtgcagGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                    ||    |||| ||     |||   ||  |   |   | | |   ||        ||     || | ||  |      ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| | ||||||||||| || || |||||||| |||||||||||
-------------------gtatgattattacctttgcaatagatcgtgttaaaattcaatgtgttggggggcagtgacacttcttttatct----gcagGTATCGTGCTTGACTCTGGTGATGGTGTGAGCCACACTGTTCCAATATATGAAGGATATACGCTTCCTCATGCTATCCTCCGGTTGGATCTTGCTGGCCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
---acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
     |  | |          | | || |  |   || |    |  ||  |||| ||||  | |   ||||||    |   || |  | |      |   |||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagta--aatgttttatttagaggagcttat-gtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 3
-acatatacatgagtgggatatacatgtatttccacattaatt-cctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
      ||  ||   |   ||||  | | | | | || ||||   |   | |  | | | || |   |   | | | |   |  |    |   | | |||||||||||| || || || ||||||||||||||||| || |||||||| |||||||| ||||| |||||||||||||| |||||  |||| |||||||||||
ggtcagtaggtgttagaattatat-tatctatgctcaataatagtcgtgcaattatt-taatgttggtcagtgcatatggctaatgctgttttaatcaacagGTATTGTTCTGGACTCGGGTGATGGTGTGAGCCATACTGTTCCCATCTATGAAGGATATGCACTTCCTCATGCAATCCTTCGTCTGGATCTTGCTGGCCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaa-acagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                         ||| |  | || | |  | |       ||| |||     |  |    || |   ||   |||||   || |  ||||||| ||| | || |||||||||||||| |||||||| || || || |||||||| ||||| ||||||||||| || || ||  ||||||||||||| ||
-------------------------gtaataactcactca--catggttgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATGAAGGATATGCCCTTCCTCATGCCATCCTGCGTCTGGACCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 3
-----acatatacatgagtgggatatacatgt-atttccacattaattcctcacga---ccagtattatttccttat---tttcttgtctttgttatgttggcattaaa--cagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
     |    | |   |     | |  ||| | ||||  ||||   |  || |  |       | ||| |  |  ||   |       ||  | ||  | |    ||||  |||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| ||||| | | | || || ||||| ||||||||  | || |||||||| ||
gtatgatgattgctgtacaaaaaaaaccatttgattttaacatacttatctaaaaaaaattgattttaatatccaatgagtagtcgaactgcgctaactagtttataaatgcagGTATTGTACTTGACTCTGGTGATGGTGTAAGTCACACTGTTCCAATATACGAAGGATTTACACTCCCGCATGCTATTCTTCGACTCGATCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
|   | | |||   |  | |   |  | ||| ||   |    |   |    |    || | |  || ||  ||| ||||  |||  ||  || |  ||||||||||| || || ||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G437445_T01 (Zea mays), 3'ss of exon 4
acatatacatgagtgggatatacatgtatttccacattaattc--ctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                        | | || |  |||||| ||   |    | ||| |||      | ||  | | |||  || || |    | ||   ||||||||||||| || ||||||||||||||||||||||| || || || || ||||||||  | ||||||||||| |||||||| |||||||||||||| | 
-----------------------gtatgttactgcattaaatctgtttcatatcagcatt--caaataatagtgtagtcagtgatagga-atctttctgcagGTATTGTGCTCGACTCTGGTGATGGTGTGAGCCACACCGTCCCTATCTACGAAGGGTACACGCTTCCTCATGCTATTCTTCGATTGGACCTTGCTGGTCA

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 3'ss of exon 2
-acatatacatga-gtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTT-GATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
 | ||    || |  |   |   | |  || |   |  ||||  | | |        ||  | |   |  | | |  ||||| || |  |  || |   |||||||||| ||| || ||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| | 
aaaatgagtataatatatcaagaataaataatgggaagttaaaacttaattgtttacatggtgtggctggtgtttcctctttttttttct--caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC-

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
---------acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
          |   || |  |     | ||| | | |  || | |||| ||  | ||   | || | | |    | |  |||| | ||| || |     || |  ||||||||||| || ||||||||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||| ||||| ||  |||| |||||||| ||
agtatctcagctagtataccaagaataaata-acggaagtcaaaattagttgtttaca--cggtgtgactgaagtttcctctt-tttttattct-----caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 4
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG-----------
                                                                                                              ||| ||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||           
--------------------------------------------------------------------------------------------------------------tGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCGGGACCTCACAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
-------acata-tacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
        |||| ||||| | |   | | |   | | ||  |||| ||||  | ||     || |      || || ||   |  ||| |||| ||  || |  ||||||||||| || || ||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| ||||| ||||||||  |||| |||||||| ||
aaaataagcataatacatcaataataaacaatggaagttaaacat-aattgtttaca--tggtgtgg----ctgatgtttccgctttt-ttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 3
---acatatacat-gagtgggatatacatgt--atttccac-attaattcctcacgaccagtattatttccttattttcttgtctttgttatgt-tggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
   | ||     | |  |  |||||| ||    || | ||| |  ||   |  ||   || ||       | |       | ||||||| |  | |  |  |   ||||||||||| | ||||| |||||||||||||||||||| ||||| || |||||||| ||  | ||||||||||| ||||| || ||||| ||||| || ||
gtaagatggctgtcgcctcagatatatatagtgatatgcactacaaagatcatacataca-tacggcaatcctgacacggtctctttgtcaaatatctctgtgtgcagGTATTGTGATGGATTCCGGTGATGGTGTGAGCCACACGGTTCCAATCTATGAAGGATACACACTTCCTCATGCTATTCTCCGTTTGGATCTTGCGGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
            ||  | ||      |   || | |    || |     | || |   ||  |  ||  |        | |  |   |     |   ||||||||||||| || |||||||| || ||||||||||| || ||||| || ||||||||  | ||||||||||| ||| |||| ||||||||||| || ||
------------gtacgttacgttgctgcatcga-acctgtttcatgtcagcattcgaatagcagtacgtgtagtgagtggcgacaatctttctgtgcagGTATTGTGCTCGACTCTGGTGACGGCGTGAGCCACACTGTCCCCATCTACGAAGGGTACACGCTTCCTCATGCTATTATTCGATTGGACCTTGCCGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 3
----acatatacatgagtgggatatacatgtatttcca---------cattaattcc--tcacgaccagtattatttccttattttcttgtctttgttatgttggcat-taaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
       |  || |        |||  | || |||| |         |  | ||||   |||       | | |   |   ||| |  |  || |||   | |    | |   ||||||||||||| ||||||||||||||||||| |||||| || || || || || || || || || |||||||| |||||| || |||| |||||||||||
gcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 3
acatatacatgagtgg-gatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttgg-cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
            ||   ||         ||  | ||   | ||| | | |||    |  |||| |  ||   |||   | ||   || ||  ||| |  ||||||||||  | || |||||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
------------gtaatgactcgttcacatggcgaccaaatttcattaggacttacaa-attttcccat---cttaattatgggttgctgttcatcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGAAGGTTATGCCCTTCCTCATGCCATCCTGCGCCTTGACCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatg--ttggcattaaa-cagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                  ||   ||   ||  ||   | |         |  || | |  | ||  |||||    |||   |||||  |||   ||    ||||||||||| | || |||||||||||||| |||||||| || || || || ||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
-----------------gtaatgattctttaacatggtgaccaaatttcattaggact--tcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 3
----acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
     |||| |    |  |||||| | ||| ||    | |||  |||||    |      | | || || | |  |   |     || ||||    || | |||||||||| || |||||||| || ||||| |||||||| || || || |||||||| ||||| || || ||||| ||||||||  | || ||||||||  |
tgctgcataaatgatatggggatagaaatggatagaaatatt--ttcctttttatttcactcagttgctcaatg-cacattgggattttgttttggttga-cagGTATTGTCCTGGATTCTGGAGACGGTGTCAGCCACACTGTCCCAATCTATGAAGGCTATGCCCTCCCGCATGCCATTCTTCGTCTCGATCTTGCTGGTAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttctt----gtctttgtta-----tgttggcat-taaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
           | |   |   |  | |   ||   |||  |  ||  |||| |  ||| | |  |  | |||||     | |||  |      | ||||  | | || |||||||||  | ||||||||||||||||| ||||| ||||| || || |||||||| ||||||||||| |||||||| ||||| || ||||||||||| ||
----------aaatttcaagaattttttcctcagtattggtaactgccgactatgattttcttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633420|gb|DW246783.1|DW246783
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGCGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|19269584|gb|BM885840.1|BM885840
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCA
EST: gi|209712712|gb|BW684642.1|BW684642
EST:     GTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAAGA-CTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATAT
genomic: GTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAA-GAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATAT
EST: gi|7796620|gb|AW782017.1|AW782017
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254348917|gb|GR852596.1|GR852596
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|7478918|gb|AW666456.1|AW666456
EST:     TGTTGCAATTCAAGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGAGTCTTGTGATGGTGTGATCCACACAGCTTCC-ATAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAG-TTCCCATAT
EST: gi|254325319|gb|GR838200.1|GR838200
EST:     TGTTGCAATTCACGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|19452328|gb|BM953738.1|BM953738
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGA
EST: gi|21888779|gb|BQ741992.1|BQ741992
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|15815712|gb|BI787987.1|BI787987
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213592306|gb|DB971546.1|DB971546
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGG
EST: gi|21993760|gb|BQ785288.1|BQ785288
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|37997297|gb|CF808886.1|CF808886
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTC
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTC
EST: gi|13481730|gb|BG511073.1|BG511073
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTAGATTCTGGTGATGGTGTGAGCCACACAGTTCCCAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCAT
EST: gi|192294121|gb|FG986210.1|FG986210
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209725128|gb|BW659810.1|BW659810
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAATGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209709094|gb|BW658810.1|BW658810
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213587883|gb|DB959707.1|DB959707
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGNTGATGGTGTGAGCCACACAGTTCCCATATAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGG-TGATGGTGTGAGCCACACAGTTCCCATATAT
EST: gi|209728466|gb|BW654970.1|BW654970
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|10237624|gb|BE806512.1|BE806512
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254314534|gb|GR829527.1|GR829527
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|5760178|gb|AI965541.1|AI965541
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213588628|gb|DB957664.1|DB957664
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGA
EST: gi|13477495|gb|BG507357.1|BG507357
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213599978|gb|DB966466.1|DB966466
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|13478134|gb|BG507739.1|BG507739
EST:     TGTTGCAATTCAGGCTGTCTTGTATCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213588504|gb|DB961621.1|DB961621
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|19934990|gb|BQ080020.1|BQ080020
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGAT
EST: gi|14125881|gb|BG790319.1|BG790319
EST:     GTCTCTGTATGCCAGTGGACGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: GTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254341929|gb|GR853066.1|GR853066
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|16346363|gb|BI971958.1|BI971958
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
 tcctcac  putative branch site (score: 2)
         tattatttccttattt  TA-rich tract