Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG

Basic information

species Glycine max
transcript GLYMA08G19420.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 1
tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
  |    |||||  | |  |  | |||| |     |  | |        |  |     | | |   |  | ||    ||| ||| |     ||  |      | ||  |||||||||| | ||||||||| || ||||||||   ||| ||||| |||||||||||||||
-atgatttagttgaagaaatgcg-tcgtcgtcgagttgtatagcaacaatgatcaggcactactacttgttaaagtattaactctctgcagctctt-----ctgtagGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 1
-tctctagtagtttcaaacttttgatc--gttgcttcatcttttctttggttttgttttttat--ttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
   | | ||||  | ||  ||| | ||  ||| | |  |  | | ||    | |  | ||| |     || |  ||||  | |||| |   ||| |      ||| ||  || |||||||||| || ||||||||||| || |||||   ||| |||||||| ||||||||||||
tgtttttgtaggatgaatgtttagttcaagttacatttttctgtattaatctatagtctttgtaaacactgttttgaatgatttattttgtgttatgcagATCAG-TTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01600.1 (Oryza sativa), 3'ss of exon 1
-----tctctagtagtttcaaacttttgatcgttgcttcatctt-ttctttggttttgttttttatttcct-ttcctgaacaacttatctcccgttctctgctacagGTTT-TAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
     ||   | |  ||| |        |  |   | || ||   || | | |      |  | |    ||  | ||    ||  |||   |   |||||||  |   | | ||  |||||||||| | ||||||||| || ||||||||   ||| ||||| |||||||||||||||
agtactcatcaatgattt-agttgaagaaatgcgtcgtcgtcgagttgtatagcaacaatgatcaggcactactacttgttaaagtattaac---tctctgcagCTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G126190_T03 (Zea mays), 3'ss of exon 1
tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
 ||  |   |   | ||      |   |||||   | |  | ||  | |   | || | || | | ||||      | |        |  ||    |       ||| |||||||||| | |||||||||||| || ||||||  ||| ||||||||||| |||||||||
gctgaaaatgcagctaataccaaac--ttgct--gtttcctattgagatagatattctgttacttatcctttgtctcctcgtgtttttgttccagcatcatcagTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 1
----tctctagt-agtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
     || |  | |   |  | ||  |             | |  | ||  | |   | || | || | | ||||      | |        |  ||    |       ||| |||||||||| | |||||||||||| || ||||||  ||| ||||||||||| |||||||||
gtttcctttgctgaaaatgcagctaataccaaacttgctgtttcctattgagatagatattctgttacttatcctttgtctcctcgtgtttttgttccagCATCATCAGTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 1
tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatc-tcccgttc--------tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
   |  | |  ||||||      |  ||| |||  ||       | ||          | |  | |  |||| | |  |||  | |  | |          |||  ||| | |  | |||||||||||| ||||||||| || ||||||||    || ||||| |||||||||||||||
--gcatgcacattcaaatcc---actgttccttt-tcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagCAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 2
--tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
    || |||  |      | ||     ||||    |       ||      || ||  |||||  ||   |  | |    |  |   |     |||| ||| | || | |||||||||||| ||||||||| || ||||||||    || ||||| |||||||||||||||
caaatccagtcttccttttcattcacatgttgaactaaaacactttcatcactggttggtatttgattctatccatatgccacatt--gccgcttgctgcagTTCTTTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G110378_T01 (Zea mays), 3'ss of exon 1
tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
      ||  |      | ||     ||||    |       ||      || ||  |||||  ||   |  | |    |  |   |     |||| ||| | || | |||||||||||| ||||||||| || ||||||||    || ||||| |||||||||||||||
------gtcttccttttcattcacatgttgaactaaaacactttcatcactggttggtatttgattctatccatatgccacatt--gccgcttgctgcagttctttagAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T12 (Zea mays), 3'ss of exon 1
tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatc-tcccgttc--------tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
      | |  ||||||      |  ||| |||  ||       | ||          | |  | |  |||| | |  |||  | |  | |          |||  ||| | |  | |||||||||||| ||||||||| || ||||||||    || ||||| |||||||||||||||
-----tgcacattcaaatcc---actgttccttt-tcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagcagTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 1
-----tctctagtagtttcaaactt-ttga--tcgttgcttcatcttt-tctttggttttgttttttatttcctttcctgaacaacttat-ctcccgttctctgctacagGTTTTA-AAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
      |   ||   ||||   |||  |||  |  ||    ||| ||| |||   || ||| |   |  |||   |  | ||    ||    ||  |     |||      ||| | | |||||||||| || ||||||||||| || || ||   ||| |||||||||||||||||||||
taggcacatcagccttttctcccttactgaagtaattagcacatatttgtctacagtcttggtaaatgcttctcctgataaattgttttcattcatgcagATTGCAGATCATTTAACATAAATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T09 (Zea mays), 3'ss of exon 1
tctctagtagtttcaaacttttgatcgttgcttcatcttttctttggttttgttttttatttcctttcctgaacaacttatc-tcccgttc--------tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
             ||||      |  ||| |||  ||       | ||          | |  | |  |||| | |  |||  | |  | |          |||  ||| | |  | |||||||||||| ||||||||| || ||||||||    || ||||| |||||||||||||||
-------------caaatcc---actgttccttt-tcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagcagttctgtagAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269584|gb|BM885840.1|BM885840
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|209712712|gb|BW684642.1|BW684642
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|7796620|gb|AW782017.1|AW782017
EST:     TGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: TGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|254348917|gb|GR852596.1|GR852596
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|7478918|gb|AW666456.1|AW666456
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|254325319|gb|GR838200.1|GR838200
EST:     CCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: CCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|19452328|gb|BM953738.1|BM953738
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|21888779|gb|BQ741992.1|BQ741992
EST:     ACCTAATCACTTCCCCACTTCCCCTGT-AATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|213592306|gb|DB971546.1|DB971546
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|207690279|gb|GD672896.1|GD672896
EST:     TTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: TTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|21993760|gb|BQ785288.1|BQ785288
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|37997297|gb|CF808886.1|CF808886
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|13481730|gb|BG511073.1|BG511073
EST:     CACTTCCCCTGTAAATCAAGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|192294121|gb|FG986210.1|FG986210
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTGGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|209725128|gb|BW659810.1|BW659810
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|209709094|gb|BW658810.1|BW658810
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|213587883|gb|DB959707.1|DB959707
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|209728466|gb|BW654970.1|BW654970
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|254314534|gb|GR829527.1|GR829527
EST:     CCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: CCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|213588628|gb|DB957664.1|DB957664
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|10709340|gb|BF009064.1|BF009064
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|213599978|gb|DB966466.1|DB966466
EST:     ACCT-A--A--T---CACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|19934990|gb|BQ080020.1|BQ080020
EST:     ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: ACCTAATCACTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
EST: gi|254341929|gb|GR853066.1|GR853066
EST:     CTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAG                         GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA
genomic: CTTCCCCACTTCCCCTGTAAATCACGTTTAGTTCGCACAAGgtgtgttttg ... tctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttgttttttatttcctttcctgaacaacttatctcccgttctctgctacagGTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG
                               cttatctcccgttctc  CT-rich tract
       ttttttatttccttt  TA-rich tract