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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt...

Basic information

species Glycine max
transcript GLYMA08G19420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtt-tgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
|||||||||||||| || ||||||||||||||||||||||| || |||||||| || || ||||| ||  | || ||||||||||||||| | || || |||  |   ||  | |      |  || ||   ||   || |  ||| |  |||||   | |   |    |||   |||                       
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatatt-cactttattcatgaactgttgctc---ttgatgcag-----------------------

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgt--ttctgtgattgatcttggatttaccaattttactatactgtggt-catgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||| || || ||  | || || ||||| |||||  |||| |||||| |||  |  | |  || |  |     || |||||||     | || | |    | |   |||| || |||  |  |  |    ||| |||   || |    
GAGAAAATGACACAGATTATGTTTGAGACGTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTGCTTTCACTCTATGCTAGTGGCCGAACAACAGgtatgtgatgttttacttaacttctttctttccaatttcttggttcttttgcatctatagattcatttagatgagagc--tcggatgattaagaactattct-

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatt-tcaattggattgggccagttatttgaataaatgctgtatgt----
|||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || ||||| ||  | || || |||||||||||  | ||||| ||| ||| |     | | ||||  |  ||    | || | |     | | |      ||| |  | | |  ||  |||  | |      | |  || | | |    
GAGAAGATGACCCAGATTATGTTTGAGACTTTCAATGTCCCTGCAATGTACGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatg---aactcatctctgtctttt--acttcaatgaggagggtttgctcaattatgcacttgtatgatccacctctgctgccatacacttttttttaat

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgttt-ctgtgattgatc--ttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
||||||||||| ||||||||||||||||| ||||  || || ||||||||||| || ||||| || ||  | || || ||||| |||||| | ||||| |||  ||   |   || | | |  ||  ||||   |||| |  | | ||       ||  || ||||| |    ||  ||         ||         |  |
GAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGgtaagtgaacaaagaataagcattttcatttgtaaattctgttttgctac---tctggaatctcaatagagcaggaacaaaccgggtgatgttcaaatcaaat

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
||||| ||||||||||| ||||||||||| |||||||  || || |||||||| || ||||| |||||  | || || |||||||||||  | || |||||  ||| ||  |  |  |   |  |   |  | | ||  || |||    ||   | |||    |   ||    |||||   |||  |   |  || |   
GAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGgcatgtgtccattttctactattcaaa-atgagtctttgtacacttacatctcttcatt--ggtgatatgaccccagtgcgttg--tggcttgtgcag--

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatttaccaattttactatactgtggtcat-gtgatttcaattggattgggccagttatttgaataaatgctgtatgt-
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||  | || || ||||| |||||  | ||||| ||| ||      |  ||   |||   |||  |  |  | |  |    | ||  | |  |     ||    |||  ||   |||     |     |||| | | 
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctgatcctt--cctttactttggcgttgattcagtttcatagttctagctagcaacatctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatttaccaattttactatactgtggtcat-gtgatttcaattggattgggccagttatttgaataaatgctgtatgt-
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||  | || || ||||| |||||  | ||||| ||| ||      |  ||   |||   |||  |  |  | |  |    | ||  | |  |     ||    |||  ||   |||     |     |||| | | 
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctgatcctt--cctttagtttggcgttgattcagtttcatagttctagctagcatcatctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 5'ss of exon 4
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattgg-attgggccagttatttgaataaatgctgtatgt---
|||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| || ||  |||| || |||||||||||| | ||||| ||| ||      |  ||   |||   |||     |  | |  || |   ||  | |||       | | | |    |  |  | | ||||  ||||||   |   
GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctgcttctt--cctttactttggtgttgattcagtatttcagttctctgaccagtcctagtaatatctctatggtctcaata--tgctgttattaag

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtt-tgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||||||  | || ||||| ||||||||| | || || |||  ||  ||     || |  | |     |  ||||| | ||     |   ||  |  |  ||  |  |||  |   |||  |       || | |     
GAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactc----gttcacatggcgacca--aatttcattaggactta--caaattttcccatcttaattatg--ggttgctgttcatcattcag-----

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatt--taccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
|||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| || ||| |||| || ||||| |||||  | ||||| ||| ||      |  ||  | || | |   |    ||     | |   ||  || | |   ||   ||  ||| |||   ||||      |     | | | |
GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctgctccttccttttagttcagtgttgatccagttttctagtaatc-tctctctttgtttccattaggctc-ttatcaacccaccaagtatcttt

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtt-tgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattggattg-ggccagttatttgaataaatgctgtatgt
||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||  | || ||||| ||||||||  | || || |||  || |||| | |     | |||  | ||||| |||  |      |   ||  |  || ||  |  |||  ||   | | ||     |            
GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattctttaa-----catgg--tgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcag-----------

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGg------tttgtttctgtgattgatcttggatttaccaattttactatactg----tggtcat--gtgattt--caattggattgggccagttatttgaataaatgctgtatgt--
||||||||||||||||||||||| ||||| |||||||  || || ||||||||||| || || |||||| | || ||||||||||| ||  | ||||||||      |    ||       | ||    | ||| | |     ||    |||    | |||||  ||||| |  | |    |||   | |  ||| |      |  |||| ||   
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgt--ttctgtgattgatcttggatttaccaa--ttttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
|| |||||||| ||||| |||||||| ||||||| ||| ||||| ||||||||||| ||||| |||||| | || || ||||| |||||  | || || |||  ||  |    | ||     ||  ||| |   |  || |  | |  ||  |   ||  || | |||    |      |  || ||||  ||| |    ||  
GAAAAGATGACACAAATCATGTTTGAAACTTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTCCTTTCCCTTTATGCTAGTGGCCGTACCACTGgtaagtgatcaaataatcagcattttattcatgtacattctttttttttgctgctctggaatcttaatctagt---ataaactagttgaccaaaggtgaaata-

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgt--ttctgtgattgatcttggattt------accaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt
|| |||||||| ||||| |||||||| || |||| ||| ||||| ||||||||||| ||||| |||||  | || || ||||| |||||  | || || |||  ||  |    | ||     ||  ||||      |   || ||  |   |||  ||| ||  || | |||      |    | | | ||||  ||  |        
GAAAAGATGACACAAATCATGTTTGAAACCTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCCCTATATGCTAGTGGCCGTACCACTGgtaagtgatcaaataatcatcattttatttgtgtgcattcatcttgttgctctggagtc-tggaatcttaatcatccagcagaactgaattgaccaatggt-------

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtg-attg-atcttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt-
||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||| || || |||||  |||||||||||||||||||  | || |||||||||| ||   | | || |  ||| |    | || |  |  |   | | ||  |||| | |   |   ||||  |   |||||     ||  | |     | 
GAGAAAATGACCCAGATTATGTTTGAGACCTTCAACGTACCTGCCATGTATGTTGCTATCCAAGCTGTGCTGTCTCTGTATGCCAGTGGTCGTACAACAGgtttgtgtcaaagcactgcaagttgtagaagcaaaatacaagacctttttgt-gtgtg-tgtgtgtgtcattgttcatattattcttg-aaccgttagccatt

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 4
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatct----tggatttaccaattttacta--tactgtggtcatgt-gatttcaattggattgggccagttatttgaataaatgctgtatgt--------------------------------------------------
||||||||||| || || ||||| ||||| ||||| ||||| || ||||| || || |||||||| ||  |||| || |||||||||||| |||| || |||  ||    |     |   |    || ||  | ||  |    |   | |    ||  ||  | | |     |   ||||    ||        ||    |||  ||                                                  
GAGAAGATGACGCAGATCATGTTCGAGACGTTCAACGTGCCGGCGATGTACGTGGCCATTCAGGCAGTGCTGTCACTATATGCCAGTGGACGAACGACCGgtgagtgatgggagaaggggtgaggtgaatgcagcatgtgcgttggttgcgaaagtggtggaggtgtgtggagaggtggggtgtttgacatgggaaggtttgtgggtcggggtaagaaactgagagcagttgtggtgatgaatgcaatgcaatgcag

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttg---tttctgtgattgatcttggatttac-caattttactatactgtggtcatgtgatt--tcaattggattgggccagttatttgaa-taaatgctgtatgt-------------------------------------------
|||||||||||||| || ||||| ||||| |||||||| || |||||||| || || || || || ||| | || || || || |||||| | ||||| ||| ||   ||| | |      |  | | | ||  |||  |   |     ||| |  | |  ||  |   |||   | | |  | |  || || |   | ||   | |                                           
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCGATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagtttttttatcccttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttgtttttccctctaacacgttgtatgatcgtggtttgtgatcag

upper sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttg-----tttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatt--tcaattggattgggccagttatttgaa-taaatgctgtatgt--------------------------------------------
|||||||||||||| || ||||| ||||| |||||||| || |||||||| || ||||| || || ||| | || || || || |||||| | ||||| ||| ||     ||| | |   |   ||||   |   |||  |   |     ||| |  | |  ||  |   |||   | | |  | |  || || |   | ||   | |                                            
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCAATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagttttttttttcctttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttttttcttctctctaacacgttgtatgatcgtggtttgtgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633420|gb|DW246783.1|DW246783
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGCGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|19452328|gb|BM953738.1|BM953738
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGA
EST: gi|21993760|gb|BQ785288.1|BQ785288
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209728466|gb|BW654970.1|BW654970
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|7796620|gb|AW782017.1|AW782017
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213599978|gb|DB966466.1|DB966466
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|21888779|gb|BQ741992.1|BQ741992
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|15815712|gb|BI787987.1|BI787987
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209709094|gb|BW658810.1|BW658810
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209725128|gb|BW659810.1|BW659810
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAATGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254341929|gb|GR853066.1|GR853066
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|19934990|gb|BQ080020.1|BQ080020
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGAT
EST: gi|13481730|gb|BG511073.1|BG511073
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTAGATTCTGGTGATGGTGTGAGCCACACAGTTCCCAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCAT
EST: gi|19269584|gb|BM885840.1|BM885840
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCA
EST: gi|37997297|gb|CF808886.1|CF808886
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTC
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTC
EST: gi|254314534|gb|GR829527.1|GR829527
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|192294121|gb|FG986210.1|FG986210
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|10237624|gb|BE806512.1|BE806512
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|5760178|gb|AI965541.1|AI965541
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|13477495|gb|BG507357.1|BG507357
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|13478134|gb|BG507739.1|BG507739
EST:     TGTTGCAATTCAGGCTGTCTTGTATCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254325319|gb|GR838200.1|GR838200
EST:     TGTTGCAATTCACGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254348917|gb|GR852596.1|GR852596
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213588504|gb|DB961621.1|DB961621
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|14125881|gb|BG790319.1|BG790319
EST:     GTCTCTGTATGCCAGTGGACGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: GTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|16346363|gb|BI971958.1|BI971958
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC