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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

Basic information

species Glycine max
transcript GLYMA08G19420.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttg-gcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
       |||| ||    | |  |  |||| | | || | |   |    ||    ||   ||| ||  |    || |     |  |||| |  ||   |||||||||||||||||||||||||||||||||  |||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||
------gcatgtgtccattttctac-tatt-caaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtgcagGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                    ||    |||| ||     |||   ||  |   |   | | |   ||        ||     || | ||  |      ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| | ||||||||||| || || |||||||| |||||||||||
-------------------gtatgattattacctttgcaatagatcgtgttaaaattcaatgtgttggggggcagtgacacttcttttatct----gcagGTATCGTGCTTGACTCTGGTGATGGTGTGAGCCACACTGTTCCAATATATGAAGGATATACGCTTCCTCATGCTATCCTCCGGTTGGATCTTGCTGGCCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
---acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
     |  | |          | | || |  |   || |    |  ||  |||| ||||  | |   ||||||    |   || |  | |      |   |||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagta--aatgttttatttagaggagcttat-gtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 3
-acatatacatgagtgggatatacatgtatttccacattaatt-cctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
      ||  ||   |   ||||  | | | | | || ||||   |   | |  | | | || |   |   | | | |   |  |    |   | | |||||||||||| || || || ||||||||||||||||| || |||||||| |||||||| ||||| |||||||||||||| |||||  |||| |||||||||||
ggtcagtaggtgttagaattatat-tatctatgctcaataatagtcgtgcaattatt-taatgttggtcagtgcatatggctaatgctgttttaatcaacagGTATTGTTCTGGACTCGGGTGATGGTGTGAGCCATACTGTTCCCATCTATGAAGGATATGCACTTCCTCATGCAATCCTTCGTCTGGATCTTGCTGGCCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaa-acagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                         ||| |  | || | |  | |       ||| |||     |  |    || |   ||   |||||   || |  ||||||| ||| | || |||||||||||||| |||||||| || || || |||||||| ||||| ||||||||||| || || ||  ||||||||||||| ||
-------------------------gtaataactcactca--catggttgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATGAAGGATATGCCCTTCCTCATGCCATCCTGCGTCTGGACCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 3
-----acatatacatgagtgggatatacatgt-atttccacattaattcctcacga---ccagtattatttccttat---tttcttgtctttgttatgttggcattaaa--cagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
     |    | |   |     | |  ||| | ||||  ||||   |  || |  |       | ||| |  |  ||   |       ||  | ||  | |    ||||  |||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| ||||| | | | || || ||||| ||||||||  | || |||||||| ||
gtatgatgattgctgtacaaaaaaaaccatttgattttaacatacttatctaaaaaaaattgattttaatatccaatgagtagtcgaactgcgctaactagtttataaatgcagGTATTGTACTTGACTCTGGTGATGGTGTAAGTCACACTGTTCCAATATACGAAGGATTTACACTCCCGCATGCTATTCTTCGACTCGATCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
|   | | |||   |  | |   |  | ||| ||   |    |   |    |    || | |  || ||  ||| ||||  |||  ||  || |  ||||||||||| || || ||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G437445_T01 (Zea mays), 3'ss of exon 4
acatatacatgagtgggatatacatgtatttccacattaattc--ctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                        | | || |  |||||| ||   |    | ||| |||      | ||  | | |||  || || |    | ||   ||||||||||||| || ||||||||||||||||||||||| || || || || ||||||||  | ||||||||||| |||||||| |||||||||||||| | 
-----------------------gtatgttactgcattaaatctgtttcatatcagcatt--caaataatagtgtagtcagtgatagga-atctttctgcagGTATTGTGCTCGACTCTGGTGATGGTGTGAGCCACACCGTCCCTATCTACGAAGGGTACACGCTTCCTCATGCTATTCTTCGATTGGACCTTGCTGGTCA

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 3'ss of exon 2
-acatatacatga-gtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTT-GATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
 | ||    || |  |   |   | |  || |   |  ||||  | | |        ||  | |   |  | | |  ||||| || |  |  || |   |||||||||| ||| || ||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| | 
aaaatgagtataatatatcaagaataaataatgggaagttaaaacttaattgtttacatggtgtggctggtgtttcctctttttttttct--caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC-

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
---------acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
          |   || |  |     | ||| | | |  || | |||| ||  | ||   | || | | |    | |  |||| | ||| || |     || |  ||||||||||| || ||||||||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||| ||||| ||  |||| |||||||| ||
agtatctcagctagtataccaagaataaata-acggaagtcaaaattagttgtttaca--cggtgtgactgaagtttcctctt-tttttattct-----caatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 4
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG-----------
                                                                                                              ||| ||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||           
--------------------------------------------------------------------------------------------------------------tGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCGGGACCTCACAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
-------acata-tacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
        |||| ||||| | |   | | |   | | ||  |||| ||||  | ||     || |      || || ||   |  ||| |||| ||  || |  ||||||||||| || || ||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| ||||| ||||||||  |||| |||||||| ||
aaaataagcataatacatcaataataaacaatggaagttaaacat-aattgtttaca--tggtgtgg----ctgatgtttccgctttt-ttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 3
---acatatacat-gagtgggatatacatgt--atttccac-attaattcctcacgaccagtattatttccttattttcttgtctttgttatgt-tggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
   | ||     | |  |  |||||| ||    || | ||| |  ||   |  ||   || ||       | |       | ||||||| |  | |  |  |   ||||||||||| | ||||| |||||||||||||||||||| ||||| || |||||||| ||  | ||||||||||| ||||| || ||||| ||||| || ||
gtaagatggctgtcgcctcagatatatatagtgatatgcactacaaagatcatacataca-tacggcaatcctgacacggtctctttgtcaaatatctctgtgtgcagGTATTGTGATGGATTCCGGTGATGGTGTGAGCCACACGGTTCCAATCTATGAAGGATACACACTTCCTCATGCTATTCTCCGTTTGGATCTTGCGGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
            ||  | ||      |   || | |    || |     | || |   ||  |  ||  |        | |  |   |     |   ||||||||||||| || |||||||| || ||||||||||| || ||||| || ||||||||  | ||||||||||| ||| |||| ||||||||||| || ||
------------gtacgttacgttgctgcatcga-acctgtttcatgtcagcattcgaatagcagtacgtgtagtgagtggcgacaatctttctgtgcagGTATTGTGCTCGACTCTGGTGACGGCGTGAGCCACACTGTCCCCATCTACGAAGGGTACACGCTTCCTCATGCTATTATTCGATTGGACCTTGCCGGTCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 3
----acatatacatgagtgggatatacatgtatttcca---------cattaattcc--tcacgaccagtattatttccttattttcttgtctttgttatgttggcat-taaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
       |  || |        |||  | || |||| |         |  | ||||   |||       | | |   |   ||| |  |  || |||   | |    | |   ||||||||||||| ||||||||||||||||||| |||||| || || || || || || || || || |||||||| |||||| || |||| |||||||||||
gcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 3
acatatacatgagtgg-gatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttgg-cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
            ||   ||         ||  | ||   | ||| | | |||    |  |||| |  ||   |||   | ||   || ||  ||| |  ||||||||||  | || |||||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
------------gtaatgactcgttcacatggcgaccaaatttcattaggacttacaa-attttcccat---cttaattatgggttgctgttcatcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGAAGGTTATGCCCTTCCTCATGCCATCCTGCGCCTTGACCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatg--ttggcattaaa-cagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                  ||   ||   ||  ||   | |         |  || | |  | ||  |||||    |||   |||||  |||   ||    ||||||||||| | || |||||||||||||| |||||||| || || || || ||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
-----------------gtaatgattctttaacatggtgaccaaatttcattaggact--tcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 3
----acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
     |||| |    |  |||||| | ||| ||    | |||  |||||    |      | | || || | |  |   |     || ||||    || | |||||||||| || |||||||| || ||||| |||||||| || || || |||||||| ||||| || || ||||| ||||||||  | || ||||||||  |
tgctgcataaatgatatggggatagaaatggatagaaatatt--ttcctttttatttcactcagttgctcaatg-cacattgggattttgttttggttga-cagGTATTGTCCTGGATTCTGGAGACGGTGTCAGCCACACTGTCCCAATCTATGAAGGCTATGCCCTCCCGCATGCCATTCTTCGTCTCGATCTTGCTGGTAG

upper sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttctt----gtctttgtta-----tgttggcat-taaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
           | |   |   |  | |   ||   |||  |  ||  |||| |  ||| | |  |  | |||||     | |||  |      | ||||  | | || |||||||||  | ||||||||||||||||| ||||| ||||| || || |||||||| ||||||||||| |||||||| ||||| || ||||||||||| ||
----------aaatttcaagaattttttcctcagtattggtaactgccgactatgattttcttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633420|gb|DW246783.1|DW246783
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGCGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|19452328|gb|BM953738.1|BM953738
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGA
EST: gi|21993760|gb|BQ785288.1|BQ785288
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209728466|gb|BW654970.1|BW654970
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|7796620|gb|AW782017.1|AW782017
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213599978|gb|DB966466.1|DB966466
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|21888779|gb|BQ741992.1|BQ741992
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|15815712|gb|BI787987.1|BI787987
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209709094|gb|BW658810.1|BW658810
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|209725128|gb|BW659810.1|BW659810
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAATGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254341929|gb|GR853066.1|GR853066
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|19934990|gb|BQ080020.1|BQ080020
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGAT
EST: gi|13481730|gb|BG511073.1|BG511073
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTAGATTCTGGTGATGGTGTGAGCCACACAGTTCCCAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCAT
EST: gi|19269584|gb|BM885840.1|BM885840
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCA
EST: gi|37997297|gb|CF808886.1|CF808886
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTC
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTC
EST: gi|254314534|gb|GR829527.1|GR829527
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|192294121|gb|FG986210.1|FG986210
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|10237624|gb|BE806512.1|BE806512
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|5760178|gb|AI965541.1|AI965541
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|13477495|gb|BG507357.1|BG507357
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|13478134|gb|BG507739.1|BG507739
EST:     TGTTGCAATTCAGGCTGTCTTGTATCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254325319|gb|GR838200.1|GR838200
EST:     TGTTGCAATTCACGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|254348917|gb|GR852596.1|GR852596
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|213588504|gb|DB961621.1|DB961621
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|14125881|gb|BG790319.1|BG790319
EST:     GTCTCTGTATGCCAGTGGACGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: GTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
EST: gi|16346363|gb|BI971958.1|BI971958
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtttgtttct ... cattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
 tcctcac  putative branch site (score: 2)
         tattatttccttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

-catatac
- - - - - gagtggg
- - - - - - - - - - - catgtat
- - - - - - - - - - - - - - -ttccaca
- - - - - - - - - - - - - - - - - - - - - - -cacgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgg