Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag

Basic information

species Glycine max
transcript GLYMA08G19320.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G103059_T02 (Zea mays), 5'ss of exon 3
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag-----------
|| ||||||||||||||||||||||||| | |||| |||||| | ||||||||   ||| || ||||| || ||||| | |   ||          || |||||  |  |   | ||||                       ||  |||   || |||       |||||||||||||| |||||||||||||| ||||||           
GCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAGgt-actccctgt------gtccattggttatagatcactctttg----------------------cttactcc---ctgtgtca-----cagaggtgcaagcattttgagattggtggagacaagaatggcaaggg

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G103059_T02 (Zea mays), 5'ss of exon 3
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag-----------
|| ||||||||||||||||||||||||| | |||| |||||| | ||||||||   ||| || ||||| || ||||| | |   ||          || |||||  |  |   | ||||                       ||  |||   || |||       |||||||||||||| |||||||||||||| ||||||           
GCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAGgt-actccctgt------gtccattggttatagatcactctttg----------------------cttactcc---ctgtgtca-----cagaggtgcaagcattttgagattggtggagacaagaatggcaaggg

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G125527_T02 (Zea mays), 5'ss of exon 3
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatg----tgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|| ||||||||||||||||||||||||| | |||| |||||| | ||||||||   ||| || ||||| || ||||| | | | | |   |     |  ||   |||| | | || |   ||      | ||   | | | || | |   || |  ||   |   ||||     |                              
GCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAGgt-actgtcttg---attctcccgtg--ctaaacttgctgctgaacaaagcatttctccattggttatagctcactctttgctgactccctgtgtcacag------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G103059_T01 (Zea mays), 5'ss of exon 3
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggc-atgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|| ||||||||||||||||||||||||| | |||| |||||| | ||||||||   ||| || ||||| || ||||| | |   ||          || |||||  |  |   | ||||   |    ||||||  |                                                                  
GCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAGgt-actccctgt------gtccattggttatagatcactctttgcttactccctgtgtcacag----------------------------------------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgtta-gtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctg-tctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|||||||| || ||||||||||| |||||| | ||||||||  | ||||||||| |||| |||| | | |||||||| | || |  |  |  |   ||  | |||   | |   | ||| |  |  | | |||  || |   |||||   || | | ||  |                                         
GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAGCATTTCTCGCAACGCCCGATTAAGgtaatgtctgcgacattctttacctttgtt---aatcactctttagtctcagttctgtttcttacactttgtgtgtggtttttgcag-----------------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G14320.2 (Arabidopsis thaliana), 5'ss of exon 4
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
                                           | ||||||||  |        |      |   |  |  |   |  |   || |      ||| |||| |||||||  ||| |      |   |  || ||||||   ||   |||  |  | ||    ||                            
------------------------------------------AGGTGCAAGCACTTTG------AGATCGgtggagacaagaagggaaagggaacatctctcttttaagttgttgttt--catctatctacttttttttgttttgtttg-gtacctgtcctgcttcaatactg----------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|| || |||||||||||||| || |||||||||||||||||||| ||||| || || ||||| ||  | || ||||| | ||| |   |   ||| |  |  |||    |  | ||    |   |  |   | |  ||    | |  | ||| |       | | || |     || || | |                  
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtca-tatctcaaacttaaatcgcttatttgttttcttggtcc--ctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaa-----aaccattct------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 5'ss of exon 3
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|||||||||||||||||||||||||||||| | || |||||||||||||| || || ||||| ||| | || ||||| ||  | |   |    || | |   |||    |  ||   || | | || |||    |   |   || | |    ||   || ||||     | |||||     ||| | || |  |       
GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtctta-acctcaagctacacttt----tcttttcctgccttttg-tgttacaccccttacttttacacaactgaatttttgt----tgttgcaa-----ttgggttttgcag-------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 5'ss of exon 3
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|| ||||| |||||||||||||| |||||| | ||||||||||||||||| ||||| || |||||| | || ||||| ||| | | |   | | |  | |  ||     |  | |||||   ||   | ||       |  ||| ||  || | ||   ||| |||||                                 
GCCAAGACAACCAAGAAGATTGTGCTGAGGCTTCAATGCCAGGGTTGCAAACATGTATCGCAACACCCAATCAAGgtcagtgtcttgaccatagattactttttccttcttttggtttgctttggcatttggcatagtttttttattattgcc-attgggttttgcag---------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 4
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttag-tatatggtaaacaaaacaatggt---ttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgt-ctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|| |||||||| ||||||||||| || ||||||||||| |||| ||||||||||||  | |||||  | || ||||| |  |  |       || |   ||  |   ||| ||  |  ||   | ||     |   || |  || |  ||| |||| | |  | | | ||| |   |                             
GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAGCATGTGACTCAACATCCCATCAAGgtaacctgcactaccggcagacttattttctgttagagcagacgtactgaatcgctcg---ggatgttgttcagtttctgtgcaacttcggtttgcggtccta----------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 5'ss of exon 4
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgt----tagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcacttt--gagattggtggtgacaag--------------------------------------------------------------------
||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||  | || ||| |||| |||||     | | |||  |         | | | ||    ||     |   ||||||   | | || |  |  ||||   |||   |||     | |     ||   | | |||  || ||   |        |                                                                    
GCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcag

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 5'ss of exon 4
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttg---gcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
|||||||| |||||||||||||| |||||||| || ||||||| ||||||||| ||  | |||||  |||| ||||| | ||     | |            | | | ||      | |   | ||||  |   |   ||||| | | ||  |||  ||    | ||| | |  ||   |  | || |  ||    |       
GCTAAGACTACCAAGAAGATTGTACTGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcat----tcgtgta-acatgtgtgttcgtttaattttacag-------

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 5'ss of exon 4
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgt----tagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggcta--atggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag--------------------------------------
|||||||| |||||||||||||| ||||||||||| || |||| ||||||||| ||  | |||||  | ||||||||    || |   |  ||    |      ||          |||  | | |     |||  | ||   |||  |  ||       | ||| || |    |  | | |  |  |   |  |  |  |  | |                                       
GCTAAGACTACCAAGAAGATTGTGCTGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacag

upper sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 4
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
||||||||||| ||||||||||| || ||||||||||||||||  |||||||| ||  | |||||  |||| ||||| ||||  |  |   |    | | || |    ||   | | || |  |   |   | |  | |  || ||      |||| |  |  |  |   ||      | |||                  
GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagttctcgtcctttcgagggctc---gtctgtttctgacgaggattaccttggaagtc-ttggtcatcagctatctcatatttaatgagt-----tattttc-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666733|gb|AW278192.1|AW278192
EST:     TGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAG                         AAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTT
genomic: TGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatat ... tggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTT