ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgttaacctaagtgcataggaattaggagtttttttcctgacaaaaacatttttatttttaattgattag

Basic information

species	Glycine max
transcript	GLYMA08G19320.2
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgttaacctaagtg--cataggaattaggagtttttttcctgacaaaaacatttttatttttaattgattag--------------------------------------------------------------------------
|||||||||||| |||||| |  ||||||| ||||| |||||||| || ||||| || || || ||||| || || || ||||| |||||||||||||||||||  |   ||  ||||| |||    ||  | |      |   |       |     |  ||||  |  ||       ||                                                                          
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaa--tgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G125527_T02 (Zea mays), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacct--ctcgttaacctaagtgcataggaa---ttaggagtttttttcctgacaaaaacatttt----tatttttaattgattag----------------------------------------------------------
 |||||||| || |||||| |  ||||||| ||||| |||||||| || ||||| || || || ||||| || || || ||||| |||||||||||||||||||     |   |  |  | | || |     |   ||    |||||  | ||  ||  ||  | |     ||| |   | |  | |                                                           
TAAGAAGGGCAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcagcatatctatttgattgtacttatacctttgtctgttttgatgctagcatgaatgtctgaaaatatctgcgaattctaaatgcctgttcagtgattaatgtgggatatgacaaatgagattgtatttatacctttcag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G103059_T01 (Zea mays), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgttaacctaagtgcataggaattaggagtttttt--tcctgacaaaaacatttttatttttaattgattag--------------------------------------------------------------------
 |||||||| || ||||||||  ||||||| ||||| || ||||| || ||||| || || ||  |||| || || || ||||| |||||||||||||||||||     | |  | |||  || || | | |||    ||| |   |  |||    | |||   | | |  || |   |                                                                      
TAAGAAGGGCAAGGATAGCATGTCTGCCCAGGGAAAGCGTCGTTATGACCGCAAGCAGTCAGGACATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcaacat--atctatttg-attgtacttatacctttgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaataatttgggatatgacaaatgtgattgtattaatacctttcag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G160351_T03 (Zea mays), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgt-------aacctctc----gttaac----ctaagtgcataggaattaggagttttt---ttcctgacaaaaacatttttatttttaattgattag---
|||||| ||||| |||||| || | || ||||| || || ||||| || |||||||| ||||| ||||| || || || ||||| || ||||||||||||||       ||  ||||    |||  |    | || | ||||   |       ||||    ||| | |     |   |||  ||  |   |   ||    
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaacacaaattctctactgtttgcagtaccaattacatactgaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacat

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G160351_T01 (Zea mays), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgt-------aacctctc----gttaac----ctaagtgcataggaattaggagttttt---ttcctgacaaaaacatttttatttttaattgattag-----------------------
|||||| ||||| |||||| || | || ||||| || || ||||| || |||||||| ||||| ||||| || || || ||||| || ||||||||||||||       ||  ||||    |||  |    | || | ||||   |       ||||    ||| | |     |   |||  ||  |   |   ||                        
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaacacaaattctctactgtttgcagtaccaattacatactgaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacattaactcttcggtctattcag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgttaacctaagtgcataggaattaggagtttttttcctgacaaaaacatttttattttt-aattgattag---------------------------------------------------------------------
 ||||| |||||||||||| |||||||||||||||| || ||||| ||||| ||||||||||||||||| || || || ||||||||||||||||||||||||  ||| | ||  | |   |  ||    | |    || || |   ||| ||  |  ||   ||||   |||||| |                                                                       
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctc--tcgttaacc--taagtgc-------ataggaattaggagtttttttcctgacaaaaacattttta--------tttttaattgattag--------------------------------------------------------------------------------
||||||||||||||| ||  ||||||| |||||||| || ||||| || || ||||||||||||||||| || || |||||||| ||||||||||| |||||||| |   |  | |  |  | | ||         |  ||||||||  |  ||      |   |   | |||||        ||| || | || |                                                                                  
CAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGgtaacattgattatcatgcattgattgttttttcagtttgaattaggtctagttagttgaaatgaggtagttttaaggaaccatttatagtagaattttggaagtgagctgtgaggaaacagacattccaatagtctcagttttggactgagatacatcttgtgaatcttgttaacag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaa----cctctcgttaacctaag----tgcataggaattaggagtt--------tttttcctgacaaaaacattttta----tttttaattgattag--------------------------------------------------------
||||||||||||||||||| | |||||||||||||| ||| | ||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||||||||    ||| ||  |  | |       | | | | |||||  | ||        ||| |  | |  | |    || ||    |||| || |   |||                                                        
CAAGAAGGGTAAAGATAGCTTAGCTGCCCAAGGAAAGCGCAGGTACGACCGCAAACAATCAGGTTATGGAGGACAGACAAAACCCGTCTTCCACAAGAAGgtaaagaccctttctctggcattctcctcttccttgcaattatcaattgtttcatgtttcttataatgagagagcttgtaggatttttcaaatctgtagtagaagcttataagggcaaatccccatagcattgatccatctttttctcaaaccag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 5'ss of exon 2

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgttaacctaagtgcataggaattaggagtttttttcctgacaaaaacatttttatttttaat--tgattag--------------------
||||||||| || |||||| | || || ||||| || ||  | || ||||||||||| || |||||||| ||||| || || |||||||||||||| ||||||| | | | | | |  |  | | | || ||      |   |||    |    ||  |  |||||||| |   ||||                       
CAAGAAGGGCAAGGATAGCTTAGCCGCACAAGGGAAGCGGAGGTATGATCGCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc-tcatctcacttccctcggcatcttttttagatttgaataatctaatctggttatttttgaacatgatctaatttcatgtaatataatgag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgt---taacctaagtgcataggaattaggagtttttttcctgacaaa---aacatttttatttttaattg--attag------------------------------------------------------------
|||||| || ||||||||| |||| ||||| || |||||||| || ||||| ||||| || || ||||| ||||| || || || ||||||||||| ||||||||    | |   || ||| | | | | |||| |   |    ||||  | |        | | |||| |     ||||  |||                                                              
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 5'ss of exon 3

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcg--ttaacctaa-gtgc-ataggaat---taggagtttttttcctgacaaaaacatttttatttttaattgattag--------------
                                | || ||||| ||||| ||||| || || ||||| || || || || |||||||||||||||||||||||   |    |   |  |      ||  || ||  |   | | |||  |   | ||            |    |     ||| |                
--------------------------------GCAAGCGCCGCTACGACCGCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgacagagctggcgcggcatgttatgggcgtatcttgaagtggtgaccgtggaggggtgggggtggggtgaggctgagtgctggcgcagcggatg

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ07113 (Selaginella moellendorffii), 5'ss of exon 3

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgta---acctctcgttaacctaagtgcatag---gaattaggagtttttttcctgacaaaaacatttttatttttaattgattag
                                | ||  | |||||||||||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||   | || ||| |  |    ||||       ||  || |   | |     |||   ||  | |                   
--------------------------------GTAAGAGGCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAAACGAAGCCCGTGTTTCACAAGAAGgtaggaaactttcgctgcctgctgtgctccaatcgatctaagctctctccctgtgattgaatgaatgcag---------------

upper sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ05955 (Selaginella moellendorffii), 5'ss of exon 3

CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgta---acctctcgttaacctaagtgcataggaattaggagtttttttcctgacaaaaacatttttatttttaattgattag
                                | ||  | |||||||||||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||   | || ||| ||  | || | |  |   ||    || | | | |||| | |    ||   |                
--------------------------------GTAAGAGGCGTTACGATCGCAAGCAATCTGGCTATGGCGGCCAAACGAAGCCCGTGTTTCACAAGAAGgtaggaagctttcgctattccaaattccaatcgatcta-agctctctccctg-cgattgaatgaatgcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|6666733|gb|AW278192.1|AW278192

EST:     GCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctc ... aattgattagGCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns