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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC

Basic information

species Glycine max
transcript GLYMA08G19320.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g33979.1 (Oryza sativa), 3'ss of exon 3
--gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatg----tgctgtgtg-gctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
   ||| |  || || || |   ||   | | ||| |  |  |    |||     |||||  || | |    | |   |    |   |||| |  |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||                                                                          
gtattatttcattgtcaagactccag-agctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctc-tgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAA-------------------------------------------------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
--gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatg----tgctgtgtg-gctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
   ||| |  || || || |   ||   | | ||| |  |  |    |||     |||||  || | |    | |   |    |   |||| |  |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||  ||||    ||      | |   | |  |  ||   | |                                  
gtattatttcattgtcaagactccag-agctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctc-tgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC---------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g33921.1 (Oryza sativa), 3'ss of exon 3
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggcta-atg-gtttgttcctgtct-atgttgttgt-----gcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
  || ||| |  |   ||| ||    | | ||| | ||  |    ||     | | |   || ||| ||| | | || ||| |  || || |      |||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||   | |  | | |     | ||    || ||  ||     || |                              
-gtattatttcattgtcaagactcaagctgaaaattgtcatgaatcaatcagtatctttttagatgtgttgggtgctatcttacattattattctttacagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAACTACCTACTGGATACTGAAG----TTGTGGGTCTATTGTGCTT-----------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 3'ss of exon 3
-----gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
      ||   || ||   |   || |      ||    ||  |   |  | | |    ||||    |||  |   |    |   | ||  |||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||| |||||   | |  | | |     | ||    || ||  ||  |  || |                              
gtatttttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctttttagatgtgttggatg-ctcacttacataattatt-ctgtgcagAGGTGCAAGCATTTTGAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAAACTACCTACTGGATACTGAAG----TTGTGGGTCTACTGTGCTT-----------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g33915.1 (Oryza sativa), 3'ss of exon 2
-----gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
      ||   || ||   |   || |      ||    ||  |   |  | | |    ||||    |||  |   |    |   | ||  |||||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||| |||||                                                                          
gtatttttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctttttagatgtgttggatg-ctcacttacataattatt-ctgtgcagAGGTGCAAGCATTTTAAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAA-------------------------------------------------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 3'ss of exon 3
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatg---tgctgtgtggctaatggtttgttcctg-tctatgttgttgtg---------cagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
||   |||    |      | |     |||    |   |  |   ||||   |    |  || |  |     |   |||  |  | ||||||           |||||||||||||||||||| || ||||| |||||||||||||||||||| || || |||||   |||  ||     | | | | |    |  | || || | |                                
gtctttat-caatgctttcagcttctttttttttttcctcctcatcatgttatagcattcggttttttagaagcatctgacccgtcttgttgcaatctgacttcagAGGTGCAAGCACTTTGAAATCGGTGGAGACAAGAAGGGCAAGGGAACTTCACTCTTCTAAGATGCTGAT---ATTGCCCTGTTCCCCAATTCTCTGCCAGGAG------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G160351_T01 (Zea mays), 3'ss of exon 3
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttg---tgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
           ||    |   | ||| || |   |  || | || | |    |||||   |  |  ||||   ||  || |||  ||    | ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||        || |   | | |||  | | | || || |  |                                  
-----------gtctttacggccatgcttca---ttattttgtgccctcgtttgtgt--tttgttctttgaagctaactttgtcctttaacttcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAAGCGTATCATAAACTTGCTCAGGGTCTCAAGTATCTGTCAG---------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G160351_T03 (Zea mays), 3'ss of exon 2
---gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgc-tgtgtggctaatggtttgttcctgtctatgttgttg---tgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
    | |  |   | | ||       | ||       |  || ||| |      | | ||||  |  |  ||||   ||  || |||  ||    | ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||                                                                          
actctcaacacccgatcaaggtctttacggccatgcttcattattttgtgccctcgtttgtgttttgttctttgaagctaactttgtcctttaacttcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAA-------------------------------------------------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
------------gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
             ||    | || ||  |    |  | |   |||||  |||| |  | | || | |  |   | |  ||  |  ||| ||    |||    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||  || |  ||       |||   | |  |||||  | | |   ||                             
gtgcagtgtctcattttcctgtgttaggcttg-ctgttgcacaaagta-ttgtctcactt-tgattta-gctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCAT-------CGCCCATCTCGATGTTGGATCGAACCTGTGG--------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 3
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatg----tgctgtgtggctaatggtttgttcctgtctatgttgttgtg---cagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
       ||  ||    |       |   |||| | | || |   ||      | ||   | | | || | |   || |  ||   |   ||||   ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||   | |   |     |     | | || | |||  |||  ||                                
------gtactgtcttgattctcccgtgctaaacttgctgctgaacaaagcatttctccattggttatagctcactctttgctgactccctgtgtcacagAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGCACATCTCTTTTCTAAGCTTCTCGTCCACCTGTCTGGTTGTTGA-GTTGAAGCTGTG--------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G103059_T01 (Zea mays), 3'ss of exon 3
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgt--tgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
                                       ||    | ||||     ||| ||  | |   |   ||  ||     |||    |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||| |||||                                                                          
---------------------------------------gtactccctgtgtccattggttatagatcactctttgcttactccctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAATGGCAAGGGCACGTCTCTTTTCTAA-------------------------------------------------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14320.2 (Arabidopsis thaliana), 3'ss of exon 3
gtta-gtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
|| | || |  |  |  |   ||  | |||   | |   | ||| |  |  | | |||  || |   |||||   ||  | |       ||||||||||||||||||||||||| |                                                                                                               
gtaatgtctgcgacattctttacctttgtt---aatcactctttagtctcagttctgtttcttacactttgtgtgtggtttt-------tgcagAGGTGCAAGCACTTTGAGATCG---------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
    ||  || | | | | | || |   ||| |  ||   ||||  |  || |   | ||| |    ||||    || | |  | |  | |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||  |||        | |||      | |||| |||| || || || | |  |  |                    
----gtgcatagaacatagatcagttcattataccgg--atttgtaacttggtaatttgcttaca--ttgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTG--------GTTTCA-----TCTTAT-TTTCTGCGATTTTTGTACTTGCTG-------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 3
gtta-gtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
|| | || |  |  |  |   ||  | |||   | |   | ||| |  |  | | |||  || |   |||||   ||  | |       ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||  |||    ||    |    |  ||||| |||||                                        
gtaatgtctgcgacattctttacctttgtt---aatcactctttagtctcagttctgtttcttacactttgtgtgtggtttt-------tgcagAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAAGTTGTTGTTTCATCTATCTACTTTTTTTTGTTTTGTTTGG---------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 3'ss of exon 3
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
|| ||| | | |   | | |  | |  ||     |  | |||||   ||   | ||       |  ||| ||  || | ||   ||| |||||||||||||||| ||||||||||| || || |||||||| ||||| || ||||| || ||| |   | ||||   |||   |  |||| || |      ||  |    || ||                     
gtcagtgtcttgaccatagattactttttccttcttttggtttgctttggcatttggcatagtttttttattattg-ccattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGATAAGAAGGGAAAGGGCACTTCTCTATTTTAGAT---GGATTA---TTCATGGTCTTTTTTGCT------ATACTATCTTCCTT---------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
gttagtatatgg----taaacaaaacaatggtttaaagtggttgtttggcatg-----tgctgtgtggctaatggtttgttcctgtctatgttg--ttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGG--ATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
|| ||  | |       || | | ||  |  |||       || | ||  |       | || |    | | ||  || ||  |||     |||  || |||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||| || |||   || || | ||  |||  |  |||  ||| ||      ||||||                             
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATT------ATGTTG-----------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 3'ss of exon 4
---------gtta---gtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAA-TTAGG-ATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
         || |   |||| |  |||   |   |||  ||| ||   ||| |||   |  || | |     | |   |  | | ||||| ||    || ||||||||||||||||||||||||| ||||| || |||||||| ||||| || ||||| || ||| |||| ||   ||| | | ||||  |   || || ||                                      
caaaaatttgtcaaatgtattttttaagttagcaaat--tttgaaactgtt-tttaataactgtt-tccaaatgaacctcagcttctgtc-attggattttgcagAGGTGCAAGCACTTTGAGATCGGTGGCGATAAGAAGGGGAAGGGCACTTCTCTATTTTAGATTGCAAAACCAGGCAATTGCAGGGTCC-ATCTTCCATTTT----------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------------------------------------------------------------------------------gttagtatatggtaaacaaaacaatggttta------aagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
                                                                                                     ||  |||| |  | ||      |    ||        || |  |   | || | || |       | ||  || |    |      || |  | ||||| | |||||||||||||||||||| || ||||||||||| ||||| ||    || ||||||    |    | |||||  |    || |    || ||  |                                  
gtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAGCTCTTCTAGGCAACTCGATTGGATTACCTCGCTTCTGAACTTTAGAGAG---------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 3'ss of exon 4
---gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgt---ggctaatggtttgttcctgtctatgt--tgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
    || |  |  || |  |   | | || ||||   |  ||| ||  | ||  |  |     ||||   |||   |  |  || | ||  | || ||||| | ||||||||||| |||||||| || ||||||||||||||||| ||    || || ||   | |   |    |||   |   | |||   ||  | | || |                              
tggtttcgcgtgcggaagccctcatagtgttttagtctctttgctta-cttgaacaatcctcaggcttcaggtgactaacactcaaagtgatattttgcagCGCTGCAAGCACTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACCCAACTTTTTTAAACTACATGTCTTAATTGAAA---TGTTAAAATTGTGGACTGGT------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------------------------------------------gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtg-ctgtgtggctaatggtttgttcc-tgtctatgttgttgtg-------cagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
                                                                     |   ||  ||| |  |||   | |   || |  |  |  | |  | ||   ||   | |||| |   | |      |   | ||| || ||       ||| | ||||||||||| ||||||||||| ||||||||||| || ||||||   || || ||| |     || | | ||  |     ||| | || |   ||  |  ||| |                        
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGAT-----ATAATGCTTTAC-----TTTGTATTCCGAGAAATTATGAAGCA-----------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 3'ss of exon 4
----gttagtatatggtaa-acaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggct--aatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGC-AGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
     ||  | |  |||   ||    || |  | | ||| ||||            |        |  || ||  |  | |    |||    || ||||| | |||||||| || |||||||| || ||||||||||||||||| ||    || ||||||    |   | |||     | ||  | |   || |    ||                                  
ctccttttctctggggtgttacgtctcatttctctcaagcggtttcacaatgatcacccctcaatttgaagggcctaatacgtagtattaaattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAGCTCTTCTAGGCATCACGTCAGGTCCAACTAGAGTCTGGAGTGTTGATAA----------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------gttagtatatggtaaacaaaacaatggtttaaa-gtggttgtttggcatgtgctgtgtggctaatggtttgttcc-------tgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
                  |  |   |   | |   ||||| |||| |  | ||  ||  |    |  || ||| | | |  |  || ||          |||   | |  || | ||| | ||||||||||| ||||| || || |||||||||||||||||||||   || ||||||   | |   |  || |     | |||||   | | | ||                                  
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacata-atgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG---------------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: EFJ05955 (Selaginella moellendorffii), 3'ss of exon 4
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttg-tgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
                                          ||| || |      | |||  |   |  |   || || | |||    | ||||||||||| |||||||| || ||||||||||||||||||||||||||     |||||||    |||      |||||     ||||  | | |  |  ||| ||                             
-----------------------------------------gtgggatttttctctttgctcgtccctgatcgatggctttcttgcaaatccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGC-GCGCGC---GATTCAA---TTTTCCTCTCTTGGATATGATGTTC--------------------------

upper sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
lower sequence: EFJ07113 (Selaginella moellendorffii), 3'ss of exon 4
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttg-tgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC
                                          ||| || |      | |||  |   |  |   || || | |||    | ||||||||||| |||||||| || ||||||||||||||||||||||||||     |||||||    |||      |||||  |  |||      ||     |||||                              
-----------------------------------------gtgggatttttctctttgctcgtccctgatcgatggctttcttgcaaatccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGC-GCGCGC---GATTC--AATTTTCCTCTCTTGGATGATGTTCTC---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666733|gb|AW278192.1|AW278192
EST:     TGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAG                         AAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTT
genomic: TGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatat ... tggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTT