1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...actgaatttctctgctaaatatagtaaaccttttgtcagccttattcttgtgctactataatcttctctgtatgtcactgatagttcttaagttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTACAGCATCCATCCCTTCTGAAAAATATGACTC
species | Glycine max |
transcript | GLYMA07G39940.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAG ACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAAEST: gi|151404635|gb|EV274449.1|EV274449
genomic: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGgtgcttcatt ... agttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAA
EST: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAG ACATTTGAGGAAGCTGATACCAAACATGATGGGGAAGATTGACAAGGAAGAEST: gi|208058514|gb|GD860631.1|GD860631
genomic: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGgtgcttcatt ... agttatttagACATTTGAGGAAGCTGATACCAAACATGATGGG-AAGATTGACAAGGAAGA
EST: TGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAG ACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAAEST: gi|192304195|gb|FG993507.1|FG993507
genomic: TGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGgtgcttcatt ... agttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAA
EST: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAG ACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAEST: gi|207844987|gb|GD815312.1|GD815312
genomic: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGgtgcttcatt ... agttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGA
EST: TCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAG ACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAAEST: gi|208087510|gb|GD888538.1|GD888538
genomic: TCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGgtgcttcatt ... agttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAA
EST: TCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAG ACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAAEST: gi|9259434|gb|BE347581.1|BE347581
genomic: TCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGgtgcttcatt ... agttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAA
EST: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTAATGACAAG ACATCTGGAG-AAGCTGATACCAGACATGAT
genomic: AATCTGGCATGAATCTTTCAGATGATGTGATCGAAAGTATTATTGACAAGgtgcttcatt ... agttatttagACATTTG-AGGAAGCTGATACCAAACATGAT
tcttgtgctactataatcttctctgtatgtcactgatagttcttaagttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTACAGCATCCATCCCTTCTGAAAAATATGACTC
cactgat putative branch site (score: 3)
ttcttaagttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaatttctctgctaaatatagtaaaccttttgtcagccttattcttgtgctactataatcttctctgtatgtcactgatagttcttaagttatttagACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTACAGCATCCATCCCTTCTGAAAAATATGACTC
- - - - -ctctgct
- - - - - - - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcact