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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatctggtctactgttttatctgggttttgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag

Basic information

species Glycine max
transcript GLYMA07G39940.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatctggtctactgttttatctgggttttgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag
|| ||||||||||| ||||||||||| ||||  |||||||| ||||| || || ||||| || |||||||||||||| ||  | ||||| ||||| |||||||||  ||    ||  ||||   |  |   |  | || |  | |     |  |  |   || |    | ||    ||||  | | | |  | |||| | |  |                                                                                         
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgt--gatacttagggcatgtgcacagtttgtttgatt--ccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt-----------------------------------------------------------------------------------------

upper sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttaga---agactttagctatctggtctac-tgttttatctgggttttg-aatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag
|||||||| |||||||||||||| ||  | |  |||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||||| || ||||| ||| ||         | | ||||     ||||| ||| ||   | ||  ||||  ||||  ||| |   |   ||   ||  | ||   |   |||||   |                                                                                                 
TTGTTTGACACAAAGCACAATGGAATTTTAGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGACTgtgagctctcgtgttttgtagattggtactttggctttcaactataaatgttaaatctaagttctctgacatgattagc-ctaataacagtaggagcctta-------------------------------------------------------------------------------------------------

upper sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G173424_T02 (Zea mays), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaa--tgacaaatgtttagaagactttagctatctggtctactgttttatctgggttttgaatgggaagggcatt-tattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag
|| ||||| |||||||||| ||| ||  | |  |||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||||| || ||||| ||| ||     |     ||||| | |||  ||    || |||    |   | ||  ||    || |||   |     |||  ||  | |   |   ||| | | |  |                                                                                         
TTATTTGACACAAAGCACAGTGGAATTTTGGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctcccgtgttttgttttgtaga--ttgataatttggctctcaactctaaatg----ttaaatctaagttatattacatcattacatgc-ttagcttaatggt-----------------------------------------------------------------------------------------

upper sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaa-----tgacaaatgtttagaagac----tttagctatctggtctactgttttatctgggttttgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag
||||||||||||||||||||||| ||||| |  ||||| || ||||| ||||||||||| |||||||| || ||||| || || ||||| || ||| | |||| |       |  |   | | |  || ||    ||  | || |   | || || | |||     ||||     |                                                                                                                              
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacat-taatgatatatactatttttttgcag------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaat-gtttagaagactttagctatctggtctactgttttatctgggttttgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag
|||||||| |||||||| ||||| ||||| |  ||||| |||||||| ||||||||||||||||||||||| ||||| || || || || |||||||| |||| |  |   |  |     ||  ||  | ||  | |   | |||  ||| |||||   ||   |||  |   | |     || |||     ||| |   ||           |||  |  |                                                                        
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtctttgatcttacaaagttgatctgagaaaccatctatacaattt-atctgatgttgacatgctacatgtaacccatg-aaatatcacta-acagttaccgggaacattgttttgcag-----------------------------------------------------------------------

upper sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 4
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctat-ctggtctactgttttatctgggttt-tgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatt--tccttaatgcatttgttattgatagtaat--gcatatgttggggattcccaactcttcctttttgcag
|||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || ||||| ||||||  |   |  |  | ||| |||   |    | || || |     | | | || ||   ||| || ||  |  |   |    | |   |  | | | ||   ||| ||||       |||| |  |  | | | ||| ||||  |  ||||  | ||     |||||| ||||| || || || |   ||||||||
TTGTTTGACACAAAGCACAATGGAATACTAGATTTTGAAGAGTTTGCGCGTGCCCTCTCTGTCTTTCATCCCAATGCACCCATTGAAGACAAAATTGACTgtaag--ttgtagttagtaagaggacaaaataagttcttgtgtgtgtgtgtgtgtgagtgagtgagtgagagagagagagaggacagaca-atttggtttatgactttagtttactactcttatcttctacttcctgatg-atttcatgctgatgcttattgatgtatgtttgggatgcc-aaatcatttcttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196422|gb|HO041165.1|HO041165
EST:     TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         TTTCATTCCAATTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAGG
genomic: TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ctttttgcagTTTCATTCCAATTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAGG
EST: gi|151404635|gb|EV274449.1|EV274449
EST:     TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         CTTCATTCCAATTTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAG
genomic: TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ctttttgcagTTTCATTCCAATT-GTATGATCTCAAACAACAAGGTTTTATTGAAAGACAG
EST: gi|192304195|gb|FG993507.1|FG993507
EST:     TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         TTTCATTCCAATTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAGG
genomic: TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ctttttgcagTTTCATTCCAATTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAGG
EST: gi|9259434|gb|BE347581.1|BE347581
EST:     TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         TTTCATTCCAATTGTATGATCTCAAACAACAAGGGTTTATTGAAAGACAGG
genomic: TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ctttttgcagTTTCATTCCAATTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAGG