1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atctgtttttactctcaattttcttctttttatcaaaatcataaaaaataggaaagaaattaacaaaataagatatttatgtgttttattgttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAG
species | Glycine max |
transcript | GLYMA07G39940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGT TTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAEST: gi|151404635|gb|EV274449.1|EV274449
genomic: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGTgtatgtcata ... gttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCA
EST: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGT TTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAEST: gi|19452698|gb|BM954108.1|BM954108
genomic: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGTgtatgtcata ... gttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCA
EST: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGT TTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAEST: gi|192304195|gb|FG993507.1|FG993507
genomic: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGTgtatgtcata ... gttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCA
EST: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGT TTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAEST: gi|26269292|gb|CA820355.1|CA820355
genomic: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGTgtatgtcata ... gttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCA
EST: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGT TTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAEST: gi|9259434|gb|BE347581.1|BE347581
genomic: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGTgtatgtcata ... gttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCA
EST: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGT TTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCA
genomic: GCAACCTACAGGTTTAGAAAATCCTGAAGTTCTTGCAAGAGAGACCGTGTgtatgtcata ... gttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCA
aaataggaaagaaattaacaaaataagatatttatgtgttttattgttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAG
aaagaaattaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgtttttactctcaattttcttctttttatcaaaatcataaaaaataggaaagaaattaacaaaataagatatttatgtgttttattgttgacacagTTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - -caaaatc
- - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa