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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTTTTGTCCCTACGAATCATCTATATATTGGTGATATATTTTTGGTTAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctctttcggttgattcattgccaagtaccttgtttatgtatctcctattatgctcgttaacaatgtatatggagagatattgtatctatatga...

Basic information

species Glycine max
transcript GLYMA04G39490.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g64780.4 (Oryza sativa), 5'ss of exon 5
AGTGTTTTTGTCCCTACGAATCATCTATATATTGGTGATATATTTTTGGTTAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctct--ttcggttgattcattgccaagtacc------ttgtttatgtatctcctattatgctcgttaacaatgtatatggagagatattgtatctatatga------------------------------------------------------------------------------------
|| |||| ||| || || |||||||| || |||||||| |||||| |||| || ||  | || || |||||||||||| | |||||||||||||| || ||| |||||||   |   | | ||  | |  |   |||       |||  |    || | ||||| | || |||     |||   |          || ||  |   ||                                                                                    
AGCGTTTATGTGCCAACAAATCATCTTTACATTGGTGACATATTTCTGGTGAACTCTGAGGAGATAATAAGACCAAATTTATCCATTCGAGAAGGAATCGgttggttctcctatcttgcttatgtactatctcctactgcaatattgcatgatcatgtgctattttactggtttctcctgtgcttaatttctctctgcatagagtggatgataaaaccttcctgaagtcaatcgacccatgtaattctaaatttctaatacagtgtttttcttttctttctgcatcattcag

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 7
AGTGTTTTTGTCCCTACGAATCATCTATATATTGGTGATATATTTTTGGTTAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctctttcggttgattcattgccaagtaccttgtttatgtatctcctattatgctcgttaacaatgtatatggagagatattgtatctatatga--
||||||| ||| || || |||||| ||||||| ||||| || |||||||| || ||||  || |||||||| || ||| | |||||||| |||||||||||| ||||| ||| |  |   || |        |    || |  ||| ||    |  |       ||||  |   ||||   |    ||  |    | ||   
AGTGTTTATGTGCCAACCAATCATTTATATATCGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttc-cttgctctctttttacctttgcctctactgctactgt-tcagagaaaagaaaatataacgcttcttatgttaattgctttcaatggtttggtt

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G149662_T01 (Zea mays), 5'ss of exon 6
AGTGTTTTTGTCCCTACGAATCATCTATATATTGGTGATATATTTTTGGTTAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctctttcggttgattcattgccaa-gtaccttgtttatgtatctcctattatgctcgttaacaatgtatatggagagatattgtatctatatga-
||||| | ||| || || ||||||||||| || ||||| |||||| |||| || ||  | || || |||||||| ||| | |||||||||||||| ||||||| | |   |   |  | || |  |   |   | ||  ||       |  | |   ||  | |||     | |          || ||| || || |  | 
AGTGTGTATGTGCCAACAAATCATCTATACATCGGTGACATATTTCTGGTGAACTCTGAGGAGATCATAAGACCTAATTTATCCATTCGAGAAGGAATTGgtacggtagttgatgcct-atcctctattattatgccacgtggcaactttccttgaaatcattgttgtttttctcatctagtcaattttgcat-tacaaaaa

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g02010.t01 (Vitis vinifera), 5'ss of exon 6
AGTGTTTTTGTCCCTACGAATCATCTATATATTGGTGATATATTTTTGGTTAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctctttcggttgattcattgccaagtaccttgtttatgta---tctcctattatgctcgt-taacaatgtatatggagagatattgtatctatatga-
|||||||||||||| || || |||||||| ||||||||||||||| | || || ||||| || || || ||||||||||| || |||||||||||||| ||||  |||| |||  | |   |||    | | | | || ||  |  |    | | |   | ||| || | |  || |   |       | |||    ||  | | 
AGTGTTTTTGTCCCGACAAACCATCTATACATTGGTGATATATTTCTCGTCAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAGgtacattctgtttttgctc-ctcaccctctattcctttcttgttacaaaaccacattgcaggcttgtgtcatcatttccttaacatctttttggcaataattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193639094|gb|FK585559.1|FK585559
EST:     AGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: AGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|254349027|gb|GR860299.1|GR860299
EST:     TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|151407101|gb|EV276916.1|EV276916
EST:     TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|151397141|gb|EV267014.1|EV267014
EST:     TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|254330500|gb|GR841765.1|GR841765
EST:     TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|31466200|gb|CD408228.1|CD408228
EST:     TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|31459279|gb|CD401307.1|CD401307
EST:     TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|193608000|gb|FK557025.1|FK557025
EST:     ATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: ATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
EST: gi|51342654|gb|CO983619.1|CO983619
EST:     CAAATCTTTCCATTCGAGAAGGCATTG                         AAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG
genomic: CAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatgcagAAATCATTGTTTCCGGAGGAATGACTATGCCACAGTTGATATCTCCAGTGG