1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctgtttggtgtgatatatatagattacaaagtttcatattttttcaagagaaaatctatttttgtcttgctattaactcattctgtgcacttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATG
species | Glycine max |
transcript | GLYMA04G39490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|9901349|gb|BE610317.1|BE610317
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|9564106|gb|BE473615.1|BE473615
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|22523553|gb|BU082355.1|BU082355
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|151407101|gb|EV276916.1|EV276916
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|8284138|gb|BE021697.1|BE021697
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|151397141|gb|EV267014.1|EV267014
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|151405159|gb|EV274973.1|EV274973
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTATTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGAEST: gi|31561519|gb|CD487357.1|CD487357
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
EST: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAG GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTTTGACTGGA
genomic: AAGACCCAGCCAAGTCTCCACCAAGCTCGCCCAACTCCTCCACTCGCAAGgtccaattca ... cttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGA
caagagaaaatctatttttgtcttgctattaactcattctgtgcacttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATG
tattaac putative branch site (score: 1)
cttgtttc putative PPT
aaaatctatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttggtgtgatatatatagattacaaagtttcatattttttcaagagaaaatctatttttgtcttgctattaactcattctgtgcacttgtttcagGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - aagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtgc