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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtgatgagcaaccacataagagaacttgacatcacact...

Basic information

species Glycine max
transcript GLYMA04G39490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g64780.4 (Oryza sativa), 5'ss of exon 4
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgta--------------ctgtgtagtgtcactataaatttgtttaccaa---cctcttatttatattgat-----taaatatg---tgtgatgagcaacca--cataagagaacttgacatcacact------------------------------
||||||| || || || |||||||| || || || || ||||| || ||| ||||||||||||||||||| ||||| |||||||||||| |||| ||||||              || | | |  | | ||| | || | ||| |||    || ||||| |  |   |     || | |||   ||  |||    | |    ||| | | |  ||   |    ||                              
ATCAAAACACAACAGCTTTTAAAGAAGTTGCGATAATTCGTCATCCACGTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatgtagggttctatatggaataaatatgagttagattaacaaaaatctgttattgaggtgcttcgtcatagacatgccatgccatgtatgatccgtaataggtgcaactgtgcttgttcttatgttagtcttgtttgtgttctatggcag

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g36110.2 (Oryza sativa), 5'ss of exon 5
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtact-gtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtga-tgagcaaccacataagagaacttgacatcacact
|||||||||| || || |||||||| || ||||| ||  |||| || ||| ||||||||||||||||||| || || ||||| ||  | || || |||||| | || ||     |  ||    |     |  ||     | || ||  |       ||    ||  |     |  || |       | | |  |||    
ATCAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGTCATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGgtatttgtttatacatatcatgtgctctagaatgaatagaatcttgatggtttcagcctacacctgcctagatgattacctccagatgcctcat-tcatgt-

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 6
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtgatgagcaaccacataa--gagaacttgacatcacact----
|||||||||| || || || ||||| |||||||||||  |||| || ||||||||||||||||| ||||| || || ||||||||  |  |||| |||||||| | |    |||||  |  | ||| |  |     |      || | |  |   | || |||||||| |    | ||    | |   || |  || | |    
ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGTTGGTGAATATGCGTTTGGATTCATAACATCAACCATGGTTCTTCAGgtacttttt--catcactgcagctatgtatggcttagaccagcaaatgtggtct---tttg-gtgatgagtattttcctagttaatatgctgtccgcagattttgt

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G052855_T01 (Zea mays), 5'ss of exon 5
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtgatgagcaaccacataa--gagaacttgacatcacact-
|||||||||| || || || ||||| |||||||| ||  |||| || ||||||||||||||||||||||| || || ||||||||  |  |||| |||||||| | |  || |||  |  |  ||| ||     || | |     |    | |  | |   |||||   |    | ||    | |   || |   | | | 
ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGTTGGTGAATATGCATTTGGATTCATAACATCAACCATGGTTCTTCAGgtactttttcatg-cacactgcagctgtgtatgg--ctttgaccggcagatgtaatcttttaatgatggatattttcctagttaatatgctgtccatagattt

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G149662_T01 (Zea mays), 5'ss of exon 5
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaat-ttgtttaccaacctcttat-ttatattgattaaatatgtgtgatgagcaaccacataagagaacttgacatcacact-
|||||||||| ||||| || ||||| || ||||| || ||||| || ||  ||||||||||||||||||| || || |||||||||||  | || ||||||||   |  | |   || |||| ||| | |  ||    | || || |||  ||   | |  ||    |   ||   ||||     | |  ||||   |   
ATCAAAATACGACTGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACTGTGGTCCTTCAGgtact---tgatatatatagaaatgttgctgaagaaaaattcatattctatatataggaaagttgctgaggcaaaattcatacttttagtgaacatatgagcc

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 5
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtgatgagcaaccaca--taagagaacttgacatcacact
|||||||||| || || || ||||| || ||||| || ||||| || ||  ||||||||||||||||||| || || |||||||| ||  | || ||||||||   |  | |   |||| |   |||  |  |      ||| |||||   |  | |     | ||   |  || |  | | |   || |  | || |  
ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAATTGGTGAATATGCATTTGGATTCATAACATCAACGGTGGTCCTTCAGgtacttgatcttctatatatagaaaagtt-gctgaagcaaaattcatattctatgtacagaaaggttgctgaggcaaaagtcatacttctagtgaccatat-

upper sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g02010.t01 (Vitis vinifera), 5'ss of exon 5
ATCAAAATACCACTGCCTTTAAAGAGGTAGCAATTATCCGTCACCCGCGTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgtagtgtcactataaatttgtttaccaacctcttatttatattgattaaatatgtgtgatgagcaaccacataagagaacttgacatcacact-
| |||||||||||||| |||||||||||||| || |||||||| || ||||||||||||||||||||||| |||||||||||||| || || || |||||||| |    |   |  ||   | |  ||   |     | |    | ||| | || |  || ||| ||| |      |        ||      |     
ACCAAAATACCACTGCTTTTAAAGAGGTAGCTATCATCCGTCATCCACGTGTTGGTGAATATGCATTTGGTTTTATTACATCAACAGTAATCCTTCAGgtacttttagataatatgatttctcttcttgaaatttgttcaagctttttgctcaagtcagtttga-gaggatttttgttcctttttttattcatatgtga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330499|gb|GR841764.1|GR841764
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|254349027|gb|GR860299.1|GR860299
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|9564106|gb|BE473615.1|BE473615
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTTGTTTT-GTCCCTACGAATCA
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGT-GTTTTTGTCCCTACGAATCA
EST: gi|151407101|gb|EV276916.1|EV276916
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|151397141|gb|EV267014.1|EV267014
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|151405159|gb|EV274973.1|EV274973
EST:     GTGTTGGTGAATATGCACTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|254330500|gb|GR841765.1|GR841765
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|31466200|gb|CD408228.1|CD408228
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|31459279|gb|CD401307.1|CD401307
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
EST: gi|31561519|gb|CD487357.1|CD487357
EST:     GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAG                         AAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT
genomic: GTGTTGGTGAATATGCATTTGGCTTTATTACATCAACTGTTATTCTACAGgtactgtgta ... tccatttcagAAAGATAATGAAGATGAAGAGCTTTGTAGTGTTTTTGTCCCTACGAATCAT