1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttaatctctccaatggatgatctggatcttggtacttgaccttactctttcttttgaatgtgatgtataaaatgagaaggctcttcgtttttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGTTTCGTCGTGGATGGGAGCCACTGTTTTCTGGATTGGAGAATGGTTCAT
species | Glycine max |
transcript | GLYMA04G39490.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|254349027|gb|GR860299.1|GR860299
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|9901349|gb|BE610317.1|BE610317
genomic: TCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGEST: gi|208071436|gb|GD873009.1|GD873009
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|9564106|gb|BE473615.1|BE473615
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|22523553|gb|BU082355.1|BU082355
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|151407101|gb|EV276916.1|EV276916
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|8284138|gb|BE021697.1|BE021697
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|151397141|gb|EV267014.1|EV267014
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|151405159|gb|EV274973.1|EV274973
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATGGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|31561519|gb|CD487357.1|CD487357
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTANTCCAATATACTCCAGGCTCGGGATAGATGTATTTG GACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTG
ctctttcttttgaatgtgatgtataaaatgagaaggctcttcgtttttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGTTTCGTCGTGGATGGGAGCCACTGTTTTCTGGATTGGAGAATGGTTCAT
ctcttcgttttt CT-rich tract
atgtataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatctctccaatggatgatctggatcttggtacttgaccttactctttcttttgaatgtgatgtataaaatgagaaggctcttcgtttttggtgcagGACTTGGTTTTATTACATCATTAGCTTTTGTATTTCTTATTGGTGTTTTTGTTTCGTCGTGGATGGGAGCCACTGTTTTCTGGATTGGAGAATGGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -tctctcc
- - - - - - - tggatga
- - - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg