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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGAGAACTAAGTATAGCAGAGAAGACGAATTACCTAGTTTTTATGATAAATGCCTTTCAGgtatgctgccactgcactttgtcttttacttaagttatgcatgatatatgttggctttaatttaaacacgcgtgtttacttgattggtgtgtaagtttat...

Basic information

species Glycine max
transcript GLYMA0048S00340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 3
GGACGAGAACTAAGTATAGCAGAGAAGACGAATTACCTAGTTTTTATGATAAATGCCTTTCAGgtatgctgccactgcactttg---tcttttacttaagttatgcatgatatatgttggctttaatttaaacacgcgtgtttacttgattggtgtgtaagtttat
||| |     ||||||||||||||||||| |||||| |  |||| ||||| ||||||||||||||||| ||  ||      ||    ||   || |||   ||||  |  | | | || |   |    |  | | |  | ||||    |      | |||  |   
GGAAGGAGCTTAAGTATAGCAGAGAAGACCAATTACTTGCTTTTCATGATTAATGCCTTTCAGgtatggtgagacaagttattagaatcacatatttattgtatgttttgtctttattagtaatttgattgataggtctatttatacaacatccctataaaat---

upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 3
GGACGAGAACTAAGTATAGCAGAGAAGACGAATTACCTAGTTTTTATGATAAATGCCTTTCAGgtatgctgccactgcactttgtcttttacttaagttatgcatgatatatgttggctttaatttaaacacgcgt-gtttacttgattggtgtgtaagtttat
||| |     |||| |||||||||||||| |||||| |  |||| ||||| ||||||||||||||||| ||  |  |   || ||   |   || ||||||   |   | || ||   | ||  ||         |   ||| ||||||| |  ||   |  ||
GGAAGGAGCTTAAGGATAGCAGAGAAGACCAATTACTTGCTTTTCATGATTAATGCCTTTCAGgtatggtgaaagag-gtttagtggatgtatttagttattagtatcacatatttattgtatgttttgtctatatcaattatttgattgctaggtccatccat