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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTAAATGTTCTTTACCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTTGAGAAGATAATGCAGgtagggtcttttatttttcctatattcttacatgttgctttgtgattttgaagttttgattatttttagtagttaatgtcctagtacatggtgtgcaatg...

Basic information

species Glycine max
transcript GLYMA0048S00340.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g26960.1 (Oryza sativa), 5'ss of exon 12
AATTCTAAATGTTCTTTACCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTTGAGAAGATAATGCAGgtagggt-----cttttatttttcctatattcttacatgttgctttgtgattttgaagttttgattatttttagtagttaatgtcctagtacatggtgtgcaatg
 ||  | |||||| | || || || |||||||| || |||||  |||| || |||||||| ||||| |||||||||||  |||||||||||||||||||||||  ||     |    |||  |||| | ||  | | | ||  | | |  |||   ||     | ||||     || || ||  | |  ||       |      
GATATTGAATGTTTTATATCACAACTGTCCTTCCCAAAGAACTCTAATTATAACTCATTCCAATCAAGCTTTGAATGATTTGTTTGAGAAGATAATGCAGgtactgtaactgcaccaattactcctgttttactccttattaatctattctttatgagagagaaatattgc--atatttgatcccatgctatgccagctatc---

upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G410479_T01 (Zea mays), 5'ss of exon 13
AATTCTAAATGTTCTTTACCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTTGAGAAGATAATGCAGgtagggtcttttatttttcctatattcttacatgttgctttgtgattttgaagttttgattatttttagtagttaatgtcctagtac-atggtgtgcaatg---
 ||  |||||||||| || || || |||||||| || |||||  | || || || || || |||||||||||||||||  | |||||||||||||||||||||    | ||| | |  | |||||  |   |  || | |  | |  ||  |        | ||     ||  |  |||   | | |  || ||| || |    
GATATTAAATGTTCTATATCACAACTGTCCTTCACAAAGAACACTGATTATAACCCACTCCAATCAGGCTTTGAATGATTTATTTGAGAAGATAATGCAGgta---ccatttttgtgccatatatgatctgaacttacctctt-accttacatccgcaccttttcaagatatatggtgtatcaatgctgtgctgtacattattg

upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G38770.1 (Arabidopsis thaliana), 5'ss of exon 11
AATTCTAAATGTTCTTTACCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTTGAGAAGATAATGCAGgta------gggtcttttatttttcctatattcttacatgttgctttgtgattttgaagttttgatt-atttttagtagttaatgtcctagtacatggtgtgcaatg
|||| | |||||||| ||||| || |||||||||||||| || || ||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||      |  ||||   |  ||    ||||  ||     |  | | | || ||  |  |||||   | || |   ||| ||   |    |  ||  | |   |  
AATTTTGAATGTTCTATACCACAACTGTCCTTCTCAGAGGACATTGATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGGAGgtactattggcatcttcgttgcttttgttatttatatggagtcatatttaatgttttatgtttgacggagttctgagagtcaaatgctacatggatcttttttcag-

upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 11
AATTCTAAATGTTCTTTACCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTTGAGAAGATAATGCAGgta-gggtc------ttttatttttcctatattcttacatgttgctttgtgatttt----gaagttttgattattttt--agt---agttaatgtcctagtacatg-----gtgtgcaatg----
 ||  | ||||||||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| | | |      ||| |||  |   ||||  |    | ||  |||   |||      |||  ||| | |  |  |  |||   | | ||  ||||    |||      || | | |||    
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcatgaagtttaattacttgaatatgatattgtttttttttacaattgaagaagaaacttttaatgctcctccagttacaatcaagttcctgaagcatttatatgtttactatgtcag

upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 11
AATTCTAAATGTTCTTTACCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTTGAGAAGATAATGCAGgta-gggtcttttatttttcctatattcttac-atgttgct-ttgtgattttgaagttt-tgatt---------atttttagtagttaatgtcctagtacatggtgtgcaatg-----------------------
 ||  | ||||||||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| | | | || | |||   ||  |    |  || ||| | || | ||||| |  |||   |||         | ||||| |  ||       ||| |    ||    || |                       
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcattaagtttaattacttgaagatgatattgttattattatttttatttttacaattgaagaagaaacttttaatgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208325099|gb|GE124017.1|GE124017
EST:     CTTTGAATGACCTGTTTTGAGAAGATAATGCAG                         AGAGATGTTCCTGCACGTTATCTTCTTCGACTTGGTCAAGGAGAACAAGAG
genomic: CTTTGAATGACCTG-TTTGAGAAGATAATGCAGgtagggtctt ... tttgttttagAGAGATGTTCCTGCACGTTATCTTCTTCGACTTGGTCAAGGAGAACAAGAG