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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTCATTTCGACCCTCTCGCTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgtctctattctcttctctcttctaataatgttcattattcctttcgttttatgtgaatttcactcgtgtcttgtgtgccttgcag

Basic information

species Glycine max
transcript GLYMA0048S00340.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g26960.1 (Oryza sativa), 5'ss of exon 1
GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTCATTTCGACCCTCTCGCTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgtctctattctcttctctcttctaataatgttcattattcctttcgttttatgtgaatttcactcgtgtcttgtgtgccttgcag-------------------------------------
||| |||||||| || ||||| ||||| |||||  | ||||||||   ||  ||| |||||||||| || |||||||| ||| |||||||||||||||||||    |  | |  | |||||| |      | |   | |     |  |   |||    |   | | || || | | |  ||  ||                                     
GGTCAGCCAGTACCTCGAGAACTACCTCTGGCCAAACTTCGACCCGGCCGGCGCCTCCTTCGAGCACGTCATGTCCATGATCCTCATGGTCAACGAGAAGgtgctgacccgcccccctcttcgacccccctactcgaattggagcaatcgctgttggctgttcccttg-ctcgggcgatttctagggtttctgatgtagtttgggtttttttttgtgtgcag

upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G410479_T01 (Zea mays), 5'ss of exon 1
GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTCATTTCGACCCTCTCGCTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgtct-ctattctcttctctcttctaataatgttcattattcctttcgttttatgtgaatttcactcgtgtcttgtgtgccttgcag---------
||| |||||||| || ||||| ||||||||||| || ||||||||  | |  ||  |||||||||| || |||||||||||| ||||||||||||||||||||  |  ||  | |   |    |   |  | |   |      | |    |  |  ||||||    || |||    ||  |||            
GGTCAGCCAGTACCTTGAGAACTACCTGTGGCCGCACTTCGACCCGGTTGACGCTTCCTTCGAGCACGTAATGTCCATCATCCTCATGGTCAACGAGAAGgtcagcctttgccctgaattggattggagcgcttgctggctgctgctagctcgggcaatttctagggtttctgacatggtttgggccttgtgcag

upper sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 1
GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTCATTTCGACCCTCTCGCTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgtctctattctcttctctcttctaataatgttcat-tattcctttcgttttatgtgaatttcactcgtgtcttgtgtgccttgcag--------------
 || || |||||||||||||||||| |||||||| ||||||| |||    | ||  | || |||||||| ||||| || ||  ||||||| |||||||||||      | |  |||   ||  ||   | |   | | ||   ||      |  || |    |      |    ||    |||                 
AGTGAGTCAGTATCTGGAGAATTACTTGTGGCCTAATTTCGATCCTGAAACGGCGTCATTTGAGCATGTGATGTCGATGATACTCATGGTGAACGAGAAGgtacgggctttgctctggttttgaaacttttaggtctgtttggttgccaggaaatgtaggaaaacaagataaaatggaggttgtgaattcatatgctggg