1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtattattctattatttttatttcagattttgcgtccgaataaatagcaggaaagttaactccgtagaatcaaaattttcttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCAGTTG
species | Glycine max |
transcript | GLYMA0041S00260.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCGGAGCCCGATTAATCTCG GGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAGEST: gi|18038806|gb|BM307100.1|BM307100
genomic: ATCGGAGCCCGATTAATCTCGgtaagtatta ... cttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAG
EST: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCG GGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAAGGATTCCTCAGEST: gi|31305155|gb|CD390358.1|CD390358
genomic: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCGgtaagtatta ... cttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAG
EST: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCG GGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAGEST: gi|10236348|gb|BE805236.1|BE805236
genomic: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCGgtaagtatta ... cttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAG
EST: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCG GGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCCGAAGG-ATTCGTCAEST: gi|208181099|gb|GD980166.1|GD980166
genomic: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCGgtaagtatta ... cttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCC-GAAGGGATTCGTCA
EST: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCG GGTGCATCTGCAATCATCCTTCCCATAATTEST: gi|7588053|gb|AW703857.1|AW703857
genomic: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCGgtaagtatta ... cttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATT
EST: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCG GGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAGEST: gi|13563482|gb|BG551702.1|BG551702
genomic: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCGgtaagtatta ... cttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAG
EST: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCG GGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAG
genomic: TACCATTTCCTTCACCTAAGAGAGTATGGATCGGAGCCCGATTAATCTCGgtaagtatta ... cttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAG
tccgaataaatagcaggaaagttaactccgtagaatcaaaattttcttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCAGTTG
agttaac putative branch site (score: 3)
ttttcttgt putative PPT
tagaatcaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattattctattatttttatttcagattttgcgtccgaataaatagcaggaaagttaactccgtagaatcaaaattttcttgtgttagGGTGCATCTGCAATCATCCTTCCCATAATTAAGGCCGAAGGGATTCGTCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC