1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgttagcttttcgccttttcctattatctgacataacttctaatttaagatggagcagaacttcactgaactcattaaagcttataaagctaatgtaattcttttaatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTTGTGCATCCCCTGATCTGGCAAGGAAGGAAATGCGCCAAGCTTGCTTCG
species | Glycine max |
transcript | GLYMA0041S00260.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTEST: gi|18038806|gb|BM307100.1|BM307100
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTEST: gi|31305155|gb|CD390358.1|CD390358
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTEST: gi|10236348|gb|BE805236.1|BE805236
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTEST: gi|15815016|gb|BI787291.1|BI787291
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTEST: gi|7588053|gb|AW703857.1|AW703857
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTEST: gi|13563482|gb|BG551702.1|BG551702
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTEST: gi|31561206|gb|CD487044.1|CD487044
genomic: ATGCACCCACACTCTGTAAATACCTTGAATCATTTTATACCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
EST: ACCCACACTCTGTAAATACCTNNTGAATCATTTTATANNCCTTGCGTAAG CCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
genomic: ACCCACACTCTGTAAATACCT--TGAATCATTTTATA--CCTTGCGTAAGgtaatgttag ... taatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTT
acttcactgaactcattaaagcttataaagctaatgtaattcttttaatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTTGTGCATCCCCTGATCTGGCAAGGAAGGAAATGCGCCAAGCTTGCTTCG
ttttaat putative branch site (score: 3)
ttctttt CT-rich tract
ttataaagctaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttagcttttcgccttttcctattatctgacataacttctaatttaagatggagcagaacttcactgaactcattaaagcttataaagctaatgtaattcttttaatttgcagCCTGTGGCATCCACCATAAATACATTGGCAGGTGCTCTTTACAAAGTATTTTGTGCATCCCCTGATCTGGCAAGGAAGGAAATGCGCCAAGCTTGCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT