Sequence
atgc intronic sequence ATGC exonic sequenceGTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTTCAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAGgtagtgtagatattgcacttgtatattgtggttgatcatgggttttggagattctctccagaattttgcctaaataaacatctgtgaagtctgttttgtgtttaactgcag
Basic information
species | Glycine max |
transcript | GLYMA0041S00260.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA0041S00260.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g08550.t01 (Vitis vinifera), 5'ss of exon 2
GTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTTCAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAGgtagtgtagatattgcacttgtatattgtggttgatcatgggttttggagattctctccagaattttgcctaaataaacatctgtgaagtctgttttgtgtttaactgcag
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GTACGCGTGATTGAAAGAGACTTAACTGAGCCTGACCGAATTGTTGGTGAACTGCTACAGCCAGGGGGCTACCTCAAATTGATTGAGTTGGGGCTTCAAGgt----------tcgcatacg---attaaaattgaaccagatttgttccaatga---ccagaaatttaactgttccaatttcatttatatctgctgtttttggactgacag
upper sequence: GLYMA0041S00260.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ23930 (Selaginella moellendorffii), 5'ss of exon 2
GTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTTCAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAGgtagtgtagatattgcacttgtatattgtggttgatcatgggttttggagattctctccagaattttgcctaaataaacatctgtga-agtctgttttgtgtttaactgcag
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GTTTTGTTGATCGAGAGGGATTGTTCCGAGCCGGATAGAATCGTTGGAGAGCTGCTACAACCCGGTGGCTATCTCAAGCTCGTGGAGCTTGGAATGAAAGgtactgagctcatt---cttttctactttgtttc--------ttttg-----tttctcct---ctttgccttgactga-gtttgcgatattctatacag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209715569|gb|BW657362.1|BW657362EST: GTTGCTTCAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAG ATTGTGTGGACAAAATTGATGCTCAGCAAGTGTTTGGTTATGCCCTTTTCA
genomic: GTTGCTTCAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAGgtagtgtaga ... ttaactgcagATTGTGTGGACAAAATTGATGCTCAGCAAGTGTTTGGTTATGCCCTTTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTTCAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAGgtagtgtagatattgcacttgtatattgtggttgatcatgggttttggagattctctccagaattttgcctaaataaacatctgtgaagtctgttttgtgtttaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG