1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gccagcggggtgctgctagggctttgcgtaacccgcaacgtaacatgacacgggtgagaaatgctacacctctgtgccccctggcttaacaaccatgtagGACATTGGGGTTGTGCCGGAGAAGCACATCCGCATCTACTCGGCATGCCTGGCGCCACTGGATGAGCACACGCGG
species | Chlamydomonas reinhardtii |
transcript | EDP07812 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGACAAGGCCGTGGGCAACATGATTGGACTGGGGCCGGTAGCCTGTCAG GACATTGGGGTTGTGCCGGAGAAGCACATCCGCATCTACTCGGCATGCCTGEST: gi|22076394|gb|BQ825170.1|BQ825170
genomic: TTGACAAGGCCGTGGGCAACATGATTGGACTGGGGCCGGTAGCCTGTCAGgtgcgtgcat ... aaccatgtagGACATTGGGGTTGTGCCGGAGAAGCACATCCGCATCTACTCGGCATGCCTG
EST: TTGACAAGGCCGTGGGCAACATGATTGGACTGGGGCCGGTAGCCTGTCAG GACATTGGGGTTGTGCCGGAGAAGCACATCCGCATCTACTCGGCATGCCTG
genomic: TTGACAAGGCCGTGGGCAACATGATTGGACTGGGGCCGGTAGCCTGTCAGgtgcgtgcat ... aaccatgtagGACATTGGGGTTGTGCCGGAGAAGCACATCCGCATCTACTCGGCATGCCTG
tgacacgggtgagaaatgctacacctctgtgccccctggcttaacaaccatgtagGACATTGGGGTTGTGCCGGAGAAGCACATCCGCATCTACTCGGCATGCCTGGCGCCACTGGATGAGCACACGCGG
gcttaac putative branch site (score: 3)
ttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagcggggtgctgctagggctttgcgtaacccgcaacgtaacatgacacgggtgagaaatgctacacctctgtgccccctggcttaacaaccatgtagGACATTGGGGTTGTGCCGGAGAAGCACATCCGCATCTACTCGGCATGCCTGGCGCCACTGGATGAGCACACGCGG
- - - - - - - - - - - tttgcgt
- - - - - - - - - - - - - - - acccgca
- - - - - - - - - - - - - - - - - - - - - - atgacac