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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagactgcatgacctgaagtttaggcacgggctccgcacttcgcggagtccggggccccacttgcttgtggggtggattgcgcttgagcttccagtcacgcatcccacctcaagattacgggtcctctgacgcccagcacacctccctgccgctgcagAGCGGCACCAGGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTCGAGCCCATGGCGGACCACTTCTGGCAGACCGGGGCCATGTTTGACAAGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07812
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23361326|gb|BU649146.1|BU649146
EST:     AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAG                         AGCGGCACCATGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTC
genomic: AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAGgtgagactgc ... gccgctgcagAGCGGCACCAGGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTC
EST: gi|22076394|gb|BQ825170.1|BQ825170
EST:     AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAG                         AGCGGCACCAGGCAGTTGGTCTGTGTAGGCTGTGTGGACCAGGGGGATGTC
genomic: AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAGgtgagactgc ... gccgctgcagAGCGGCACCAGGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccacctcaagattacgggtcctctgacgcccagcacacctccctgccgctgcagAGCGGCACCAGGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTCGAGCCCATGGCGGACCACTTCTGGCAGACCGGGGCCATGTTTGACAAGG
                     ctctgac  putative branch site (score: 3)
                                      cctccctgcc  putative PPT
        aagatta  TA-rich tract