1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCCTGGCCACGGCTTTGACGACATTTTTCATCCAAGGCGCGGAGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAGgtgagactgcatgacctgaagtttaggcacgggctccgcacttcgcggagtccggggccccacttgcttgtggggtggattgcgcttgagcttccagtcacgcatcccacctcaagattacgggtcctctgacgcccagcacacctccctgccgctgcag
species | Chlamydomonas reinhardtii |
transcript | EDP07812 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAG AGCGGCACCATGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTCEST: gi|22076394|gb|BQ825170.1|BQ825170
genomic: AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAGgtgagactgc ... gccgctgcagAGCGGCACCAGGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTC
EST: AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAG AGCGGCACCAGGCAGTTGGTCTGTGTAGGCTGTGTGGACCAGGGGGATGTC
genomic: AGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAGgtgagactgc ... gccgctgcagAGCGGCACCAGGCAGGTGGCCTGTGTAGGCGGTGTGGACCAGGGGGATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTGGCCACGGCTTTGACGACATTTTTCATCCAAGGCGCGGAGCTAGCGGGTTTCTCCGTGCCTGCGGCAGAGTTTCAATGCGTTGAGCAGgtgagactgcatgacctgaagtttaggcacgggctccgcacttcgcggagtccggggccccacttgcttgtggggtggattgcgcttgagcttccagtcacgcatcccacctcaagattacgggtcctctgacgcccagcacacctccctgccgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG