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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGGTGTGATATTTGCGTCGAGCTCACCAACCTCGATGGCACGCTCGGCACGCCGGGAGTGCCGGATAAGCAGTGTTCGgtgaggcggcgaaagaaagacctgagtgcaagattatatacacgcagggtctgagagcctacggcggaccagatgggggagaacagtcagctggcgcggtctggagactgacccagccgcacgcgcctcacacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07812
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23361326|gb|BU649146.1|BU649146
EST:     GTGCCGGATAAGCAGTGTTCG                         GCCCTGGCCACGGCTTTGACGACATTTTTCATCCAAGGCGCGGAGCTAGCG
genomic: GTGCCGGATAAGCAGTGTTCGgtgaggcggc ... tcacacgcagGCCCTGGCCACGGCTTTGACGACATTTTTCATCCAAGGCGCGGAGCTAGCG
EST: gi|22076394|gb|BQ825170.1|BQ825170
EST:     ACCTCGATGGCACGCTCGGCACGCTTTGAGTGCCGGATAAGCAGTGTTCG                         GCCCTGGCCACGGCTTTGACGACATTTTTCATCCAAGGCGCGGAGCTAGCG
genomic: ACCTCGATGGCACGCTCGGCACGCCGGGAGTGCCGGATAAGCAGTGTTCGgtgaggcggc ... tcacacgcagGCCCTGGCCACGGCTTTGACGACATTTTTCATCCAAGGCGCGGAGCTAGCG