1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgcaagaagaccgtgttagagaacgtagactgtggaacaggttgtgctggttagagatacgacaaagccacgtcaaagccacgtcgcaatatatgccgccctcggtgctgacaggcccgctgcccgccctgcccatacgcccacatcgcgtgcgtgcccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTGCGCGCCTGCCCGGAGCTGCTGGACGTGCAGGTGGACGACCTGCCACACC
species | Chlamydomonas reinhardtii |
transcript | EDP06517 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAG GCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTGEST: gi|10783895|gb|AV640567.1|AV640567
genomic: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAGgtgcgcaaga ... cccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTG
EST: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAG GCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTGEST: gi|10789568|gb|AV645297.1|AV645297
genomic: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAGgtgcgcaaga ... cccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTG
EST: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAG GCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTGEST: gi|10785188|gb|AV641860.1|AV641860
genomic: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAGgtgcgcaaga ... cccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTG
EST: GGACGCCAAGGCGCTCGCGCTCAAG GCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTGEST: gi|10789360|gb|AV645089.1|AV645089
genomic: GGACGCCAAGGCGCTCGCGCTCAAGgtgcgcaaga ... cccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTG
EST: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAG GCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTGEST: gi|10787982|gb|AV644654.1|AV644654
genomic: GCACCTCGCTGGACATGCTGGACCTGGACGCCAAGGCGCTCGCGCTCAAGgtgcgcaaga ... cccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTG
EST: GCTCGCGCTCAAG GCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTG
genomic: GCTCGCGCTCAAGgtgcgcaaga ... cccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcaagaagaccgtgttagagaacgtagactgtggaacaggttgtgctggttagagatacgacaaagccacgtcaaagccacgtcgcaatatatgccgccctcggtgctgacaggcccgctgcccgccctgcccatacgcccacatcgcgtgcgtgcccactacagGCACAGGCGCTGCGCGCGCTGATCCCCGAGTTCCTGCCCTCCACCGTGCTGCGCGCCTGCCCGGAGCTGCTGGACGTGCAGGTGGACGACCTGCCACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA