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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCACCGCGTAGCTCTGCGGAGTCTTCAGAGCTATCGGAGGCATGCAACGCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcagtctcgcgaacgatggttgctcccctgcggcgccttggctagccccaagcgcctgccatatggggtgtgcttcctgcaccagatcttgcggtcacttactgatcctttccgcgcgcttgctttccgctttctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06517
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785133|gb|AV641805.1|AV641805
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|49470981|gb|BP098842.1|BP098842
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10785210|gb|AV641882.1|AV641882
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAAGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10784132|gb|AV640804.1|AV640804
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGC
EST: gi|10787043|gb|AV643715.1|AV643715
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10786295|gb|AV642967.1|AV642967
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10783509|gb|AV640181.1|AV640181
EST:     CTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: CTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10793477|gb|AV630843.1|AV630843
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGT
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGT
EST: gi|49468723|gb|BP096584.1|BP096584
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCT
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCT
EST: gi|10789408|gb|AV645137.1|AV645137
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10787049|gb|AV643721.1|AV643721
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10792472|gb|AV629838.1|AV629838
EST:     GCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|6551371|gb|AV397155.1|AV397155
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|6551843|gb|AV397627.1|AV397627
EST:     CTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: CTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|49465971|gb|BP093884.1|BP093884
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAACATGAGCGCCA
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCA
EST: gi|10791989|gb|AV629355.1|AV629355
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10793167|gb|AV630533.1|AV630533
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|6550736|gb|AV396520.1|AV396520
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10784164|gb|AV640836.1|AV640836
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|49470702|gb|BP098563.1|BP098563
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|49470855|gb|BP098716.1|BP098716
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10789605|gb|AV626970.1|AV626970
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10787407|gb|AV644079.1|AV644079
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|6550849|gb|AV396633.1|AV396633
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10785920|gb|AV642592.1|AV642592
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10783846|gb|AV640518.1|AV640518
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10792521|gb|AV629887.1|AV629887
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGACGCTGCAGCATGAGCGCCAGTCGAC
EST: gi|10789726|gb|AV627091.1|AV627091
EST:     GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCG                         CATGCGCGCGAGCTCAAGTCCCTGGA
genomic: GCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcag ... ctttctgcagCATGCGCGCGAGCTCAAGTCCCTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTCACCGCGTAGCTCTGCGGAGTCTTCAGAGCTATCGGAGGCATGCAACGCTGCCCTGCAAGCGCAGGAGCGCGCGTTCAGCTCAGGCGGCATGCTCCGgtacgcgcagtctcgcgaacgatggttgctcccctgcggcgccttggctagccccaagcgcctgccatatggggtgtgcttcctgcaccagatcttgcggtcacttactgatcctttccgcgcgcttgctttccgctttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
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