1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGACCGGTGTGGTGCAGGCCCTCGTGGAGGCGACGCGCCAGCGCCACCTGCTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcggcaggcgggccctggaaaggtcccatttctgcgcaccgggcgggtatacccctctgctaatcaaccctttactcttcgttcccgcgccccccaccccgcacgcacgtctctcccctacctagccactgaaccacgctcggcgctggtggtcacgaatacag
species | Chlamydomonas reinhardtii |
transcript | EDP06517 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGTEST: gi|10792472|gb|AV629838.1|AV629838
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG GTACACGCCCGAAAGCCTEST: gi|10789568|gb|AV645297.1|AV645297
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCT
EST: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGTEST: gi|10787593|gb|AV644265.1|AV644265
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGTEST: gi|6551843|gb|AV397627.1|AV397627
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGTEST: gi|10791989|gb|AV629355.1|AV629355
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGTEST: gi|10789605|gb|AV626970.1|AV626970
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG GTACACGCCCGAAAGCCTGCGCGCGCGGCTGGCCGAGCTGCACC
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACCGGTGTGGTGCAGGCCCTCGTGGAGGCGACGCGCCAGCGCCACCTGCTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcggcaggcgggccctggaaaggtcccatttctgcgcaccgggcgggtatacccctctgctaatcaaccctttactcttcgttcccgcgccccccaccccgcacgcacgtctctcccctacctagccactgaaccacgctcggcgctggtggtcacgaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA