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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcggcggcaggcgggccctggaaaggtcccatttctgcgcaccgggcgggtatacccctctgctaatcaaccctttactcttcgttcccgcgccccccaccccgcacgcacgtctctcccctacctagccactgaaccacgctcggcgctggtggtcacgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGTGTGGCAGAAGCTGGACGACAGCAACACGCCGGCGCTGTTCGCGGCGCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06517
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783509|gb|AV640181.1|AV640181
EST:     CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG                         GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: gi|10792472|gb|AV629838.1|AV629838
EST:     CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG                         GTACACGCCCGAAAGCCT
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCT
EST: gi|10789568|gb|AV645297.1|AV645297
EST:     CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG                         GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: gi|10787593|gb|AV644265.1|AV644265
EST:     CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG                         GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: gi|6551843|gb|AV397627.1|AV397627
EST:     CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG                         GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: gi|10791989|gb|AV629355.1|AV629355
EST:     CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG                         GTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGT
EST: gi|10789605|gb|AV626970.1|AV626970
EST:     CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAG                         GTACACGCCCGAAAGCCTGCGCGCGCGGCTGGCCGAGCTGCACC
genomic: CTGCGCCCCTACCACATGCAGGACGCGCACGTCCTTGCGCTAGTGGACAGgtgcgcggcg ... acgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcggcggcaggcgggccctggaaaggtcccatttctgcgcaccgggcgggtatacccctctgctaatcaaccctttactcttcgttcccgcgccccccaccccgcacgcacgtctctcccctacctagccactgaaccacgctcggcgctggtggtcacgaatacagGTACACGCCCGAGAGCCTGCGCGCGCGGCTGGCCGAGCTGCACCGGCTGGTGTGGCAGAAGCTGGACGACAGCAACACGCCGGCGCTGTTCGCGGCGCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT