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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatgggcactcttggcgggtggatgcttcccggtacactttatagtccttgtgattctcttctttttgctacgttggccacaggggactggttacacactttgcaatatgtctctaagcatttgtttatctgcagGAACAAACGGGAGCCAGTTCTACATCACACTGGGGCCACAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06422
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23358667|gb|BU646487.1|BU646487
EST:     GCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGCCAATGCTGGACCAG                         GAACAAACGGGAGCCAGTTCTACATCACACTGGGGCCACAG
genomic: GCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGCCAATGCTGGACCAGgtagatgggc ... ttatctgcagGAACAAACGGGAGCCAGTTCTACATCACACTGGGGCCACAG
EST: gi|23358310|gb|BU646130.1|BU646130
EST:     TGGCCAATGCTGGACCAG                         GAACAAACGGGAGCCAGTTCTACATCACACTGGGGCCACAG
genomic: TGGCCAATGCTGGACCAGgtagatgggc ... ttatctgcagGAACAAACGGGAGCCAGTTCTACATCACACTGGGGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggggactggttacacactttgcaatatgtctctaagcatttgtttatctgcagGAACAAACGGGAGCCAGTTCTACATCACACTGGGGCCACAG
                                        tttgttt  CT-rich tract
                                       atttgtttat  TA-rich tract